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[BUG] Fix broken tests due to outdated import statements #27

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[BUG] Fix broken tests due to outdated import statements #27

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bfecb76
fix import statements
michellewang Sep 12, 2025
6c863a4
fix more import statements
michellewang Sep 12, 2025
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4 changes: 2 additions & 2 deletions tests/conftest.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,8 @@
import pytest_mock
from nipoppy.env import PipelineTypeEnum
from nipoppy.layout import DatasetLayout
from nipoppy.tabular import Manifest
from nipoppy.workflows import InitWorkflow
from nipoppy.tabular.manifest import Manifest
from nipoppy.workflows.dataset_init import InitWorkflow

DPATH_TESTS = Path(__file__).parent
DPATH_PIPELINES = DPATH_TESTS.parent / "pipelines"
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16 changes: 7 additions & 9 deletions tests/test_pipelines.py
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Expand Up @@ -13,15 +13,13 @@
from nipoppy.config.pipeline import BidsPipelineConfig, ExtractionPipelineConfig
from nipoppy.env import PipelineTypeEnum
from nipoppy.layout import DatasetLayout
from nipoppy.utils import TEMPLATE_REPLACE_PATTERN
from nipoppy.workflows import (
BidsConversionRunner,
ExtractionRunner,
PipelineInstallWorkflow,
PipelineRunner,
PipelineTracker,
PipelineValidateWorkflow,
)
from nipoppy.utils.utils import TEMPLATE_REPLACE_PATTERN
from nipoppy.workflows.bids_conversion import BidsConversionRunner
from nipoppy.workflows.extractor import ExtractionRunner
from nipoppy.workflows.pipeline_store.install import PipelineInstallWorkflow
from nipoppy.workflows.pipeline_store.validate import PipelineValidateWorkflow
from nipoppy.workflows.runner import PipelineRunner
from nipoppy.workflows.tracker import PipelineTracker

VARIABLE_REPLACE_PATTERN = re.compile(r"\[\[(.*?)\]\]")

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