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@neurobagel

Neurobagel

An ecosystem for distributed dataset harmonization and search.

👋 Welcome to Neurobagel! 🧠🥯

Our goal with the Neurobagel project is to provide a way for researchers and other data users to define and find cohorts of individuals across datasets. Not all useful and important data can be openly shared or are allowed to be uploaded to remote servers. Our approach is to ask data providers to describe their data with metadata, so that we can let others find out about the data without having direct access to them.

We are building tools with the goal of making the annotation, integration, and searching of these easier. This project is still relatively young, but we are excited to get this into the hands of people and hope that it will be useful. The project originated from the ORIGAMI lab with the Douglas Hospital and support from many other projects, including ReproNim and NeuroHub.

For more information, check out our:

Come say hello!

Contacts: Sebastian Urchs and JB Poline

Pinned Loading

  1. api Public

    Python 4 5

  2. query-tool Public

    User interface for searching across Neurobagel graph

    TypeScript 2 3

  3. bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    Python 3 5

  4. documentation Public

    The neurobagel documentation

    JavaScript 12 7

  5. federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    Python

  6. annotation-tool Public

    TypeScript

Repositories

Showing 10 of 34 repositories
  • upptime Public

    Status dashboard of services hosted directly by Neurobagel

    Markdown 0 MIT 0 2 0 Updated Apr 13, 2025
  • recipes Public

    Configuration files for a Neurobagel deployment.

    Shell 1 MIT 1 11 1 Updated Apr 11, 2025
  • query-tool Public

    User interface for searching across Neurobagel graph

    TypeScript 2 MIT 3 37 (1 issue needs help) 2 Updated Apr 11, 2025
  • react-bagel Public template
    TypeScript 0 MIT 0 1 1 Updated Apr 11, 2025
  • ui Public
    TypeScript 0 MIT 0 6 2 Updated Apr 11, 2025
  • bagel-cli Public

    Command line tool for Neurobagel data parsing and annotation

    Python 3 MIT 5 22 (3 issues need help) 2 Updated Apr 10, 2025
  • tools Public

    Other helpful tools for interfacing with Neurobagel

    Python 0 MIT 0 2 2 Updated Apr 9, 2025
  • planning Public
    0 MIT 0 70 2 Updated Apr 9, 2025
  • federation-api Public

    REST API for query federation over multiple Neurobagel graph databases

    Python 0 MIT 0 10 2 Updated Apr 9, 2025
  • browbids Public

    Bids in a vue app would be nice

    Vue 3 MIT 0 0 1 Updated Apr 9, 2025

People

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