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2022-12-13.build6494
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@azat-badretdin azat-badretdin released this 20 Dec 10:34
· 74 commits to master since this release
2022-12-13.build6494
f716cad

This release is based on PGAP-6.4. It includes the following features and bug fixes

New features:

  • More stringent filtering of alignments of trusted proteins, resulting in improvements in the structural annotation of long proteins
  • New outputs: nucleotide and protein sequences of CDS features and enhanced Roary-ready GFF output
  • Upgrade to tRNAscan-SE 2.0.12
  • Changes in the reference data:
    • Incorporation of GeneOntology 2022-11-03 changes
    • Switch to CDD 3.20 architectures

Bug fixes

  • Serious publication retrieval bug introduced by changes in third party service during the lifetime of the previous build fixed

Third Party Software Versions Used

  • tRNAscan-SE 2.0.12
  • hmmer v.3.1b2
  • CRISPR v.1.02
  • AntiFam v.3.0
  • Rfam v.14.4
  • GeneMarkS-2 v.1.14_1.25
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