Merge remote-tracking branch 'origin/test' into prod

ncbi · Apr 24, 2024 · 24a6b00 · 24a6b00
2 parents 592124f + 04c33cf
commit 24a6b00
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Showing 22 changed files with 175 additions and 402 deletions.
diff --git a/bacterial_mobile_elem/ncbi_crisper_wnode.cwl b/bacterial_mobile_elem/ncbi_crisper_wnode.cwl
@@ -16,7 +16,7 @@ inputs:
       prefix: -input-jobs
   crisper_path:
     type: string?
-    default: /opt/crispr/1.02/bin/
+    default: /opt/crispr/1.03/bin/
     inputBinding:
       prefix: -ncbi-crisper-path
   output_dir:

diff --git a/bacterial_trna/trnascan_wnode.cwl b/bacterial_trna/trnascan_wnode.cwl
@@ -40,7 +40,7 @@ inputs:
       prefix: -g
   binary:
     type: string?
-    default: /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/ThirdParty/tRNAscan-SE/production/bin/tRNAscan-SE
+    default: /netmnt/vast01/gp/ThirdParty/tRNAscan-SE/production/bin/tRNAscan-SE
     inputBinding:
       prefix: -tRNAscan
   taxid:

diff --git a/clade_assign/align_sort.cwl b/clade_assign/align_sort.cwl
diff --git a/clade_assign/assign_clade_bacteria.cwl b/clade_assign/assign_clade_bacteria.cwl
diff --git a/clade_assign/gpx_make_outputs.cwl b/clade_assign/gpx_make_outputs.cwl
diff --git a/clade_assign/gpx_qsubmit.cwl b/clade_assign/gpx_qsubmit.cwl
diff --git a/clade_assign/tblastn_wnode.cwl b/clade_assign/tblastn_wnode.cwl
diff --git a/clade_assign/wf_assign_clade.cwl b/clade_assign/wf_assign_clade.cwl
diff --git a/clade_assign/wf_clade_assign.cwl b/clade_assign/wf_clade_assign.cwl
diff --git a/clade_assign/wf_find_marker_alignments.cwl b/clade_assign/wf_find_marker_alignments.cwl