Bump version and redown

natverse · May 31, 2019 · ea2db28 · ea2db28
1 parent ddf281e
commit ea2db28
Show file tree

Hide file tree

Showing 28 changed files with 111 additions and 69 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: nat.flybrains
 Type: Package
 Title: Additional data for use with the NeuroAnatomy Toolbox (nat)
-Version: 1.7.2
+Version: 1.7.3
 Authors@R: c(
     person("Gregory", "Jefferis", email = "[email protected]", 
     role = c("aut"), comment = c(ORCID = "0000-0002-0587-9355")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# nat.flybrains 1.7.3
+
+* add citation
+
 # nat.flybrains 1.7.2
 
 * Add `JRC2018F` female template brain and surface, the first of the Bogovic

diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
@@ -65,7 +65,7 @@ summary {
 
 /* Typographic tweaking ---------------------------------*/
 
-.contents h1.page-header {
+.contents .page-header {
   margin-top: calc(-60px + 1em);
 }
 

diff --git a/docs/pkgdown.js b/docs/pkgdown.js
@@ -25,6 +25,10 @@
     for (var i = 0; i < links.length; i++) {
       if (links[i].getAttribute("href") === "#")
         continue;
+      // Ignore external links
+      if (links[i].host !== location.host)
+        continue;
+
       var nav_path = paths(links[i].pathname);
 
       var length = prefix_length(nav_path, cur_path);
@@ -52,13 +56,14 @@
     return(pieces);
   }
 
+  // Returns -1 if not found
   function prefix_length(needle, haystack) {
     if (needle.length > haystack.length)
-      return(0);
+      return(-1);
 
     // Special case for length-0 haystack, since for loop won't run
     if (haystack.length === 0) {
-      return(needle.length === 0 ? 1 : 0);
+      return(needle.length === 0 ? 0 : -1);
     }
 
     for (var i = 0; i < haystack.length; i++) {

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,5 +1,5 @@
-pandoc: 2.3.1
-pkgdown: 1.2.0
+pandoc: 1.19.2.1
+pkgdown: 1.3.0
 pkgdown_sha: ~
 articles: []
 
diff --git a/docs/reference/Dmel.html b/docs/reference/Dmel.html
diff --git a/docs/reference/DsecI.html b/docs/reference/DsecI.html
diff --git a/docs/reference/Dsim.html b/docs/reference/Dsim.html
diff --git a/docs/reference/Dvir.html b/docs/reference/Dvir.html
diff --git a/docs/reference/FCWB.html b/docs/reference/FCWB.html
diff --git a/docs/reference/FCWBNP.surf.html b/docs/reference/FCWBNP.surf.html
diff --git a/docs/reference/IBN.html b/docs/reference/IBN.html
diff --git a/docs/reference/IBNWB.html b/docs/reference/IBNWB.html