Feature: use fanc meta from neck connective repo #22
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
6 tasks
jefferis
force-pushed
the
feature/more-fanc-meta
branch
from
e343ad3 to
d6d0da1
Compare
* this is a hack of course * if we keep it then we should try to make it more generic and allow other datasets to do something similar
* necessary if we want to do something such as trigger/update a remote download
* sourced from neck connective repo
* needed for reading tsvs
jefferis
force-pushed
the
feature/more-fanc-meta
branch
from
d6d0da1 to
895549d
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
specifically from https://github.com/flyconnectome/2023neckconnective/blob/dev/data/fanc-neckconnective-anns.tsv
This should get us going with fanc-manc matching. But it is also possible to use another local source by setting
options(coconatfly.fanc_meta). This can be specified either as a function or a path to a local file on disk.note that the use of an anonymous
functionwill delay evaluation of what is in inside the function until the option is queried. In this case flywire_sirepo_file_memo will update a local copy of the file from github if required.