ci: Add mypy

.git_archival.txt

@@ -0,0 +1,4 @@
+node: $Format:%H$
+node-date: $Format:%cI$
+describe-name: $Format:%(describe:tags=true,match=*[0-9]*)$
+ref-names: $Format:%D$

.gitattributes

@@ -1 +1,2 @@
 World\ population.ipynb linguist-documentation
+.git_archival.txt  export-subst

.github/codecov.yml

@@ -1,9 +1,6 @@
 codecov:
   notify:
-    after_n_builds: 16
-
-comment:
-  after_n_builds: 16
+    wait_for_ci: true
 
 coverage:
   status:

.github/workflows/ci.yml

@@ -10,20 +10,16 @@ on:
   push:
     paths-ignore:
       - "CHANGELOG.md"
-    branches: [main]
+    branches: [ main ]
   pull_request:
-    branches: [main]
+    branches: [ main ]
   schedule:
     - cron: "0 11 * * 4"
 
 permissions:
   # All nested workflows will inherit these permissions and so no need to declare
   # in each step file
   contents: read
-  # Cannot use it in codeql nested workflow without declaring it on
-  # top level workflow
-  # Ref: https://docs.github.com/en/actions/using-workflows/reusing-workflows#access-and-permissions
-  security-events: write
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -33,28 +29,41 @@ jobs:
   pre-commit:
     uses: ./.github/workflows/step_pre-commit.yml
 
-  codeql:
-    needs: [pre-commit]
+  static-analysis:
+    needs: [ pre-commit ]
     uses: ./.github/workflows/step_static-analysis.yml
+    permissions:
+      contents: read
+      security-events: write
 
   test-pip:
-    needs: [codeql]
+    needs: [ pre-commit ]
     uses: ./.github/workflows/step_tests-pip.yml
 
-  test-unit-functional-integration:
-    needs: [codeql]
-    uses: ./.github/workflows/step_test_unit_functional.yml
+  coverage:
+    needs: [ test-pip ]
+    uses: ./.github/workflows/step_coverage.yml
 
   test-conda:
-    needs: [codeql]
+    needs: [ test-pip ]
     uses: ./.github/workflows/step_tests-conda.yml
 
   test-ui:
-    needs: [codeql]
+    needs: [ test-pip ]
     uses: ./.github/workflows/step_tests-ui.yml
 
   build:
-    needs: [test-pip, test-conda, test-unit-functional-integration, test-ui]
+    needs: [ test-pip, test-conda, test-ui ]
     uses: ./.github/workflows/step_build.yml
     with:
       upload: ${{ inputs.upload-build-artifacts || false }}
+
+  pass:
+    name: Pass
+    needs: [ pre-commit, static-analysis, test-pip, coverage, test-conda, test-ui, build ]
+    runs-on: ubuntu-latest
+    steps:
+      - uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}
+    if: always()

.github/workflows/comment-pr.yml

@@ -12,7 +12,7 @@ jobs:
     name: Comment PR
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Comment PR
         uses: thollander/actions-comment-pull-request@v2

.github/workflows/release.yml

@@ -0,0 +1,92 @@
+name: Release
+on:
+  push:
+    tags:
+      - "v[0-9]+.[0-9]+.[0-9]+"
+      - "v[0-9]+.[0-9]+.[0-9]+rc[0-9]+"
+      - "v[0-9]+.[0-9]+.[0-9]+dev[0-9]+"
+  workflow_dispatch:
+    inputs:
+      skip-tests:
+        type: boolean
+        description: Skip
+        default: false
+      ref:
+        type: string
+        description: Tag to release
+        required: true
+
+permissions:
+  contents: read
+
+jobs:
+  pre-commit:
+    uses: ./.github/workflows/step_pre-commit.yml
+    if: "! inputs.skip-tests"
+
+  test-pip:
+    needs: [ pre-commit ]
+    uses: ./.github/workflows/step_tests-pip.yml
+    if: "! inputs.skip-tests"
+
+  test-conda:
+    needs: [ test-pip ]
+    uses: ./.github/workflows/step_tests-conda.yml
+    if: "! inputs.skip-tests"
+
+  test-ui:
+    needs: [ test-pip ]
+    uses: ./.github/workflows/step_tests-ui.yml
+    if: "! inputs.skip-tests"
+
+  test-status:
+    needs: [ pre-commit, test-pip, test-conda, test-ui ]
+    runs-on: ubuntu-latest
+    steps:
+      - uses: re-actors/alls-green@release/v1
+        with:
+          allowed-skips: pre-commit, test-pip, test-conda, test-ui
+          jobs: ${{ toJSON(needs) }}
+    if: always()
+
+  build:
+    needs: [ test-status ]
+    uses: ./.github/workflows/step_build.yml
+    with:
+      upload: true
+      ref: ${{ inputs.ref }}
+
+  publish:
+    needs: [ build ]
+    runs-on: ubuntu-latest
+
+    environment:
+      name: pypi
+      url: https://pypi.org/p/jupytext
+
+    permissions:
+      contents: read
+      id-token: write
+
+    steps:
+      - uses: actions/download-artifact@v3
+        with:
+          name: dist
+          path: dist
+      - name: Publish
+        uses: pypa/gh-action-pypi-publish@release/v1
+
+  release:
+    needs: [ publish ]
+    name: Create release
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          ref: ${{ inputs.ref }}
+      - uses: softprops/action-gh-release@v1
+        with:
+          name: Jupytext ${{ inputs.ref || github.ref_name }}
+          draft: true
+          prerelease: ${{ contains(inputs.ref || github.ref, 'rc') }}
+          generate_release_notes: true

.github/workflows/step_build.yml

@@ -1,5 +1,5 @@
 name: build
-run-name: Build test
+run-name: Build package
 
 on:
   workflow_call:
@@ -9,46 +9,29 @@ on:
         required: false
         default: false
         description: Upload build artifacts
+      ref:
+        type: string
+        description: Tag to build
 
-concurrency:
-  group: ${{ github.workflow }}-${{ github.ref }}-build
-  cancel-in-progress: true
+permissions:
+  contents: read
 
 jobs:
   build:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout source
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ inputs.ref }}
 
       - name: Base Setup
         uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1
+        with:
+          python_version: "3.x"
 
       - name: Build package
-        run: |
-          python -m pip install build wheel
-
-          # NOTE: These builds and verifications of the builds can be done more
-          # robustly with jupyter-releaser.
-          #
-          # Removed the check on size of package as we are distributing tests/ with
-          # sdist now and they are around 8MB. Seems like original check was to make
-          # sure we are not distributing node_modules and we are quite safe with that
-          # with hatch build system.
-          #
-          # Build jupytext package
-          python -m build
-
-          # Build lab extension(s)
-          npm pack --pack-destination dist jupyterlab/packages/*
-
-          # Check that the lab is there
-          if (($(tar -tf dist/*.tar.gz | grep jupyterlab/jupyterlab_jupytext/labextension/package.json$ | wc -l)==0)); then echo "Missing jupyterlab_jupytext" && exit 1; fi
-
-          # Install package and extension
-          python -m pip install dist/*.tar.gz
-
-          echo "Install went OK"
+        run: hatch build
 
       - name: Archive build artifacts
         uses: actions/upload-artifact@v3

.github/workflows/step_test_unit_functional.yml → .github/workflows/step_coverage.yml

@@ -1,41 +1,40 @@
-name: test-categories
-run-name: Run Unit/Functional/Integration and External tests using Pip
+name: coverage
+run-name: Check coverage
 
 on:
   workflow_call:
 
-concurrency:
-  group: ${{ github.workflow }}-${{ github.ref }}-test_classification
-  cancel-in-progress: true
+permissions:
+  contents: read
 
 jobs:
-  test-pip:
-    continue-on-error: ${{ matrix.experimental || false }}
+  coverage:
+    name: >
+      ${{ matrix.coverage }}
     runs-on: ubuntu-latest
 
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ "3.11" ]
         coverage: [unit, functional, integration, external]
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Base Setup
         uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1
         with:
-          python_version: ${{ matrix.python-version }}
+          python_version: 3.x
 
       - name: Install from source
-        run: HATCH_BUILD_HOOKS_ENABLE=false python -m pip install -e '.[test-cov,test-${{ matrix.coverage }}]' markdown-it-py~=3.0
+        run: HATCH_BUILD_HOOKS_ENABLE=false python -m pip install -e '.[test-cov,test-${{ matrix.coverage }}]'
 
       - name: Install a Jupyter Kernel
         run: python -m ipykernel install --name python_kernel --user
 
       - name: Run the tests
-        run: pytest tests/${{ matrix.coverage }} --cov
+        run: pytest tests/${{ matrix.coverage }} -n logical --cov --cov-report=xml
 
       - name: Upload the coverage
         uses: codecov/codecov-action@v3