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updating nucleo qc workflows to reflect cci utils update #20

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merged 2 commits into from
Aug 8, 2023
Merged

updating nucleo qc workflows to reflect cci utils update #20

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cd2f695
updating nucleo_aggregate_visualize.cwl
carmelinacharalambous Jul 20, 2023
a7e2d5e
fixing release version
rhshah Aug 8, 2023
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2 changes: 1 addition & 1 deletion cwl-commandlinetools
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Submodule cwl-commandlinetools updated 4 files
+0 −0 cci_utils/0.3.1/example_inputs.yaml
+1 −1 cci_utils/0.3.1/general_stats_parse.cwl
+1 −1 docs/cci_utils/general_stats_parse_0.3.1.md
+8 −19 requirements.txt
2 changes: 1 addition & 1 deletion cwl_subworkflows
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Submodule cwl_subworkflows updated 5 files
+1 −1 command_line_tools
+20 −2 vardict_workflow/run_processed_vardict.cwl
+29 −2 vardict_workflow/run_processed_vardict__packed.cwl
+8 −2 variant_annotation/variant_annotation.cwl
+14 −2 variant_annotation/variant_annotation__packed.cwl
2 changes: 1 addition & 1 deletion nucleo_aggregate_visualize.cwl
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Original file line number Diff line number Diff line change
Expand Up @@ -178,7 +178,7 @@ steps:
source: config
out:
- id: aggregate_parsed_stats
run: cwl-commandlinetools/cci_utils/0.3.0/general_stats_parse.cwl
run: cwl-commandlinetools/cci_utils/0.3.1/general_stats_parse.cwl
label: general_stats_parse
'sbg:x': 870.1131591796875
'sbg:y': 520.0625
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