updating working version

msk-access · Aug 8, 2023 · 19c8d99 · 19c8d99
1 parent f8ee1bf
commit 19c8d99
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Showing 5 changed files with 104 additions and 110 deletions.
diff --git a/cwl-commandlinetools b/cwl-commandlinetools
diff --git a/cwl_subworkflows b/cwl_subworkflows
diff --git a/generate_aggregate.cwl b/generate_aggregate.cwl
@@ -207,6 +207,7 @@ steps:
       - id: output
         source: output
       - id: omaf
+        default: true
         source: omaf
       - id: generic_counting
         source: generic_counting
@@ -262,7 +263,7 @@ steps:
         source:
           - qc_generator/collapsed_bam_stats_dir
       - id: biometrics_extract_files_dir
-        source: 
+        source:
           - qc_generator/biometrics_extract_files_dir
       - id: collapsed_bam_duplex_metrics_dir
         source:

diff --git a/nucleo_qc.cwl b/nucleo_qc.cwl
@@ -230,6 +230,7 @@ steps:
       - id: output
         source: output
       - id: omaf
+        default: true
         source: omaf
       - id: generic_counting
         source: generic_counting
@@ -294,7 +295,7 @@ steps:
         source:
           - qc_generator/collapsed_bam_duplex_metrics_dir
       - id: biometrics_extract_files_dir
-        source: 
+        source:
           - qc_generator/biometrics_extract_files_dir
       - id: samples-json
         source: samples-json