Splice-Site-Prediction

Prediction of Splice Sites for Human and Elegans DNA.
This work was part of a project for the course 'Machine Learning For Health Care' at ETH Zurich and was done by Rafael Bischof and Levin Moser.

Overview

The 'elegans_splice_site_prediction.ipynb' contains mutiple models to predict Splice sites in C. Elegans DNA strings.

Install the Conda environment

conda env create -f ml4hc.yml
conda activate ml4hc

Download the Data

Download the zip file from https://polybox.ethz.ch/index.php/s/OUZmQBskMA4zXND and unzip it. Copy the 'data' sub-directory into the repository folder.
Your folder structure should look the following:

Splice-Site-Prediction
│   README.md
│   ...
└───data
│      C_elegans_acc_seq.csv
│      human_dna_test_hidden_split.csv
│      ...

Run the notebooks

jupyter notebook elegans_splice_site_prediction.ipynb