Update formula and GitHub workflow files

.github/workflows/publish.yml

@@ -6,7 +6,7 @@ on:
 jobs:
   pr-pull:
     if: contains(github.event.pull_request.labels.*.name, 'pr-pull')
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - name: Set up Homebrew
         uses: Homebrew/actions/setup-homebrew@master
@@ -17,6 +17,8 @@ jobs:
       - name: Pull bottles
         env:
           HOMEBREW_GITHUB_API_TOKEN: ${{ github.token }}
+          HOMEBREW_GITHUB_PACKAGES_TOKEN: ${{ github.token }}
+          HOMEBREW_GITHUB_PACKAGES_USER: ${{ github.actor }}
           PULL_REQUEST: ${{ github.event.pull_request.number }}
         run: brew pr-pull --debug --tap=$GITHUB_REPOSITORY $PULL_REQUEST
 

.github/workflows/tests.yml

@@ -8,7 +8,7 @@ jobs:
   test-bot:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest]
+        os: [ubuntu-22.04, macos-12]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Set up Homebrew

Formula/morpheus.rb

@@ -2,23 +2,21 @@ class Morpheus < Formula
   desc "Modelling environment for multi-cellular systems biology"
   homepage "https://morpheus.gitlab.io/"
   url "https://gitlab.com/morpheus.lab/morpheus/-/archive/v2.3.0_1/morpheus-v2.3.0_1.tar.gz"
-  version "2.3.0"
-  revision 1
   sha256 "af978a1918af10d47c5af60924ad5d3d5bad24d14406eb6f7baf05a758b3eb60"
   license "BSD-3-Clause"
 
   livecheck do
     url :stable
-    regex(/^v?(\d+(?:\.\d+)+)$/i)
+    regex(/^v?(\d+(?:\.\d+)+(?:_?\d+)?)$/i)
   end
 
-#  bottle do
-#    root_url "https://github.com/morpheus-lab/homebrew-morpheus/releases/download/morpheus-2.2.6"
-#    sha256 cellar: :any,                 arm64_monterey:               "f895c1c4757d1af1a99a795a80313d548cac928cf74f6c637101f57286f27110"
-#    sha256 cellar: :any,                 monterey:                     "6e9961d869546b16d93976f6aff99393477d7cd783a10df716f872d7d96209dd"
-#    sha256 cellar: :any,                 catalina:                     "d3f22b183cbb91227991e0e94440b8af0eeb05f0a56e90c2092dbd7bc2a7f4a5"
-#    sha256 cellar: :any_skip_relocation, x86_64_linux:                 "3264fd1d6fc496ff6b76cbf51c46ccefd0eed5b76d75df6ca6b510258c23de88"
-#  end
+  #  bottle do
+  #    root_url "https://github.com/morpheus-lab/homebrew-morpheus/releases/download/morpheus-2.2.6"
+  #    sha256 cellar: :any,                 arm64_monterey:               "f895c1c4757d1af1a99a795a80313d548cac928cf74f6c637101f57286f27110"
+  #    sha256 cellar: :any,                 monterey:                     "6e9961d869546b16d93976f6aff99393477d7cd783a10df716f872d7d96209dd"
+  #    sha256 cellar: :any,                 catalina:                     "d3f22b183cbb91227991e0e94440b8af0eeb05f0a56e90c2092dbd7bc2a7f4a5"
+  #    sha256 cellar: :any_skip_relocation, x86_64_linux:                 "3264fd1d6fc496ff6b76cbf51c46ccefd0eed5b76d75df6ca6b510258c23de88"
+  #  end
 
   depends_on "boost" => :build
   depends_on "cmake" => :build

README.md

@@ -97,7 +97,19 @@ When a pull request making changes to a formula (or formulae) becomes green (all
 
 ### Get GitHub Workflows
 
-The latest available GitHub workflows created with brew tap-new can be found under [`Homebrew/brew/Library/Homebrew/dev-cmd/tap-new.rb`](https://github.com/Homebrew/brew/blob/master/Library/Homebrew/dev-cmd/tap-new.rb).
+The latest available GitHub workflows created with the [`brew tap-new`](https://docs.brew.sh/Manpage#tap-new-options-userrepo) command can be found in the Homebrew project under [`Homebrew/brew/Library/Homebrew/dev-cmd/tap-new.rb`](https://github.com/Homebrew/brew/blob/master/Library/Homebrew/dev-cmd/tap-new.rb). The two required GitHub workflow files `publish.yml` and `tests.yml` are embedded in `tap-new.rb` and should from time to time be copied from there and updated in the Morpheus tap.
+
+Or you simply create a new tap with e.g.
+
+    brew tap-new morpheus-lab/morpheus-tap-new 
+
+and this way generate two new YAML files which can be taken directly from the corresponding subfolder of the tap (in this example `/opt/homebrew/Library/Taps/morpheus-lab/homebrew-morpheus-tap-new`).
+
+If the second method is used, delete the temporary tap with
+
+    brew untap morpheus-lab/homebrew-morpheus-tap-new
+
+afterwards.
 
 See also the [Homebrew-Core Maintainer Guide](https://github.com/Homebrew/brew/blob/master/docs/Homebrew-homebrew-core-Maintainer-Guide.md).