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get_ssm_by_region needs extra check of inputs

Status: Open.

#119 In morinlab/GAMBLR.results;

· gillissierra opened on Jul 22, 2025

<code>get_gambl_metadata</code> fails for users without <code>icgc_dart</code> permissions

Status: Open.

#110 In morinlab/GAMBLR.results;

· lkhilton opened on May 13, 2025

get_coding_ssm_status include_silent_genes appears to be broken

Status: Open.

#107 In morinlab/GAMBLR.results;

· rdmorin opened on May 7, 2025

installation fails

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#104 In morinlab/GAMBLR.results;

· Kdreval opened on May 2, 2025

<code>collate_csr_results</code> and <code>collate_pga</code> do not work in <code>collate_results</code> when from_cache=FALSE

Status: Open.

#94 In morinlab/GAMBLR.results;

· mannycruz opened on Mar 10, 2025

get_coding_ssm_status and prettyOncoplot are not consistent in handling splice_region variants

Status: Open.

#93 In morinlab/GAMBLR.results;

· rdmorin opened on Mar 9, 2025

Method needed to automatically drop the low-coverage samples from GAMBL

Status: Open.

#92 In morinlab/GAMBLR.results;

· rdmorin opened on Mar 7, 2025

collate_results should work across capture/genome seq_type

enhancementNew feature or requestNew feature or request

Status: Open.

#91 In morinlab/GAMBLR.results;

· rdmorin opened on Mar 3, 2025

Weird behaviour of <code>get_coding_ssm_status</code>

Status: Open.

#86 In morinlab/GAMBLR.results;

· lkhilton opened on Feb 11, 2025

Update collate_ancestry

Status: Open.

#76 In morinlab/GAMBLR.results;

· kmcoyle opened on Jan 24, 2025

SV support is broken

bugSomething isn't workingSomething isn't working

Status: Open.

#54 In morinlab/GAMBLR.results;

· Kdreval opened on Feb 28, 2024

Add projection to get_cn_states

Status: Open.

#48 In morinlab/GAMBLR.results;

· kmcoyle opened on Feb 2, 2024