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  1. K2Taxonomer K2Taxonomer Public

    A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

    R 4 1

  2. CaDrA CaDrA Public

    Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures

    R 24 1

  3. iEDGE iEDGE Public

    integrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers

    R 6 1

  4. hypeR hypeR Public

    An R Package for Geneset Enrichment Workflows

    R 76 12

  5. pipeliner pipeliner Public

    A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

    Nextflow 44 13

  6. ppi-context ppi-context Public

    Contextualization of protein-protein interaction databases by cell line

    Python 5 2

Repositories

Showing 10 of 42 repositories
  • sigrecon Public

    Benchmarking tasks for the recontextualization of gene expression signatures

    montilab/sigrecon’s past year of commit activity
    R 0 0 16 0 Updated Apr 1, 2025
  • brca_atlas Public

    Integrated scRNAseq atlas of Breast Cancer

    montilab/brca_atlas’s past year of commit activity
    HTML 0 1 2 0 Updated Apr 1, 2025
  • K2Taxonomer Public

    A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

    montilab/K2Taxonomer’s past year of commit activity
    R 4 GPL-3.0 1 3 0 Updated Mar 31, 2025
  • brcasurv Public

    Age-adjusted survival associations of gene signatures in TCGA & METABRIC

    montilab/brcasurv’s past year of commit activity
    R 0 0 0 0 Updated Mar 24, 2025
  • hypeR Public

    An R Package for Geneset Enrichment Workflows

    montilab/hypeR’s past year of commit activity
    R 76 GPL-3.0 12 10 0 Updated Mar 19, 2025
  • 4T1_brainmets Public
    montilab/4T1_brainmets’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 13, 2025
  • yQTLpipeline Public
    montilab/yQTLpipeline’s past year of commit activity
    R 1 GPL-3.0 0 1 0 Updated Feb 10, 2025
  • BS831 Public

    Course Materials for Genomics Data Mining

    montilab/BS831’s past year of commit activity
    HTML 22 GPL-3.0 11 9 1 Updated Feb 3, 2025
  • nf-gwas-pipeline Public

    A Nextflow Genome-Wide Association Study (GWAS) Pipeline

    montilab/nf-gwas-pipeline’s past year of commit activity
    R 33 GPL-3.0 20 1 0 Updated Jan 29, 2025
  • OmicSignature Public
    montilab/OmicSignature’s past year of commit activity
    R 3 GPL-3.0 0 1 0 Updated Dec 18, 2024

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