Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add goals to generate a mapping change diff report #7962

Merged
merged 5 commits into from
Jul 25, 2024
Merged

add goals to generate a mapping change diff report #7962

Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
f1be221
add goals to generate a mapping change diff report
twhetzel Jul 14, 2024
1bfd009
Update src/ontology/mondo.Makefile
twhetzel Jul 19, 2024
5c56c7d
Update src/ontology/mondo.Makefile
twhetzel Jul 19, 2024
d90d4e5
Update src/ontology/mondo.Makefile
twhetzel Jul 19, 2024
51851bb
Remove txt KGCL output
matentzn Jul 23, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
29 changes: 29 additions & 0 deletions src/ontology/mondo.Makefile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -638,6 +638,35 @@ release_diff: reports/mondo_release_diff.md
all: reports/mondo_release_diff.md
all: reports/mondo_obsoletioncandidates.tsv

##################
### KGCL Diff ####
##################

KGCL_ONTOLOGY=mondo-base.obo

all: kgcl-diff

.PHONY: kgcl-diff
kgcl-diff: kgcl-diff-release-base

.PHONY: kgcl-diff-release-base
kgcl-diff-release-base: reports/difference_release_base.yaml \
reports/difference_release_base.tsv \
reports/difference_release_base.md

tmp/mondo-released.obo: .FORCE
wget http://purl.obolibrary.org/obo/mondo/$(KGCL_ONTOLOGY) -O $@

reports/difference_release_base.md: tmp/mondo-released.obo $(KGCL_ONTOLOGY)
runoak -i simpleobo:tmp/mondo-released.obo diff -X simpleobo:$(KGCL_ONTOLOGY) -o $@ --output-type md

reports/difference_release_base.tsv: tmp/mondo-released.obo $(KGCL_ONTOLOGY)
runoak -i simpleobo:tmp/mondo-released.obo diff -X simpleobo:$(KGCL_ONTOLOGY) \
-o $@ --output-type csv --statistics --group-by-property oio:hasOBONamespace

reports/difference_release_base.yaml: tmp/mondo-released.obo $(KGCL_ONTOLOGY)
runoak -i simpleobo:tmp/mondo-released.obo diff -X simpleobo:$(KGCL_ONTOLOGY) -o $@ --output-type yaml

###########################
## MONDO VIEW GENERATION ##
###########################
Expand Down
Loading