January 2025 release (#8546)

monarch-initiative · Jan 7, 2025 · f460d1b · f460d1b
1 parent fd071a3
commit f460d1b
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Showing 99 changed files with 90,824 additions and 70,229 deletions.
diff --git a/imports/equivalencies.json b/imports/equivalencies.json
diff --git a/imports/equivalencies.obo b/imports/equivalencies.obo
diff --git a/imports/equivalencies.owl b/imports/equivalencies.owl
diff --git a/imports/merged_import.owl b/imports/merged_import.owl
diff --git a/reports/basic-report.tsv b/reports/basic-report.tsv
diff --git a/reports/class-count-by-prefix.tsv b/reports/class-count-by-prefix.tsv
@@ -2,24 +2,24 @@ prefix	numberOfClasses
 "ENVO"	460
 "MAXO"	115
 "CHR"	310
-"MONDO"	29808
+"MONDO"	29898
 "ECTO"	421
 "IAO"	27
 "NCIT"	84
 "BFO"	18
 "MF"	14
 "SO"	85
-"UBERON"	5348
+"UBERON"	5349
 "RO"	2
 "NBO"	116
-""	5105
+""	5171
 "FOODON"	201
 "HsapDv"	86
 "HP"	4820
 "GO"	4073
 "OGMS"	5
 "MFOMD"	12
-"NCBITaxon"	1877
+"NCBITaxon"	1912
 "CL"	1200
 "CHEBI"	1214
 "PATO"	401
diff --git a/reports/class-stats.tsv b/reports/class-stats.tsv
diff --git a/reports/edges.tsv b/reports/edges.tsv
diff --git a/reports/obsoletes.tsv b/reports/obsoletes.tsv
@@ -374,9 +374,12 @@ HP:0001180	"HP:0009380"
 HP:0001322	"HP:0006872"
 HP:0002459	"HP:0012332"
 HP:0002648	"HP:0002683"
+HP:0003063	"HP:0031095"
+HP:0004366	"HP:0011013"
 HP:0006504	"HP:0000940"
 HP:0006919	"HP:0000718"
 HP:0007435	"HP:0007447"
+HP:0007543	"HP:0000962"
 HP:0008572	"HP:0000377"
 HP:0008826	"HP:0002827"
 HP:0010692	"HP:0005650"
@@ -4233,6 +4236,7 @@ MONDO:0044655
 MONDO:0044680	"MONDO:0013569"
 MONDO:0044683		"MONDO:0020640"
 MONDO:0044684	"MONDO:0006042"
+MONDO:0044715	"MONDO:0032836"
 MONDO:0044716	"MONDO:0030912"
 MONDO:0044746
 MONDO:0044747	"MONDO:0025303"

diff --git a/reports/obsoletion-candidates.tsv b/reports/obsoletion-candidates.tsv
@@ -53,6 +53,7 @@ MONDO:0016271	"adenoid cystic carcinoma of the corpus uteri"
 MONDO:0016393	"hyposmia-nasal and ocular hypoplasia-hypogonadotropic hypogonadism syndrome"
 MONDO:0016420	"familial flecked retinopathy"
 MONDO:0016583	"familial intestinal malrotation-facial anomalies syndrome"
+MONDO:0016676	"recurrent infections-inflammatory syndrome due to zinc metabolism disorder syndrome"
 MONDO:0016697	"low grade ependymoma"
 MONDO:0016821	"shoulder and girdle defects-familial intellectual disability syndrome"
 MONDO:0016827	"myopathy-growth delay-intellectual disability-hypospadias syndrome"
@@ -349,9 +350,9 @@ MONDO:0035713	"FOXG1 syndrome due to intragenic alteration"
 MONDO:0037938	"inborn disorder of aspartate family metabolism"
 MONDO:0040872	"non-psychogenic polydipsia"
 MONDO:0042973	"familial osteosclerosis"
+MONDO:0042975	"pseudoachondroplastic dysplasia 2"
 MONDO:0043108	"infantile striato thalamic degeneration"
 MONDO:0044201	"T+ B+ severe combined immunodeficiency"
-MONDO:0044715	"metopic ridging-ptosis-facial dysmorphism syndrome"
 MONDO:0044763	"diarrheal disease secondary to decreased bowel motility"
 MONDO:0044880	"cystic tumor of the pancreas"
 MONDO:0045004	"skeletal ligament disorder"
@@ -373,4 +374,5 @@ MONDO:0100107	"non-neonatal early infantile epileptic encephalopathy"
 MONDO:0100113	"hearing loss with skin disease"
 MONDO:0800112	"non-atopic asthma"
 MONDO:0850093	"absence epilepsy"
+MONDO:0859001	"CPE-related Prader-Willi-like syndrome"
 MONDO:0957426	"autosomal recessive hyper-IgE syndrome"