Merge pull request #331 from monarch-initiative/cjm-stuff

pre-release
monarch-initiative · Sep 5, 2018 · ca90932 · ca90932
2 parents 0213c11 + d6ad7cc
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diff --git a/Changes.md b/Changes.md
@@ -1,3 +1,39 @@
+## 2018-09-04 release
+
+### New classes
+
+ * [osteogenic neoplasm](http://purl.obolibrary.org/obo/MONDO_0045053)
+ * [cancer-related condition](http://purl.obolibrary.org/obo/MONDO_0045054)
+ * [cortical cataract](http://purl.obolibrary.org/obo/MONDO_0045051)
+ * [benign osteogenic neoplasm](http://purl.obolibrary.org/obo/MONDO_0045052)
+ * [nuclear cataract](http://purl.obolibrary.org/obo/MONDO_0045050)
+ * [cribriform carcinoma of breast](http://purl.obolibrary.org/obo/MONDO_0045059)
+ * [delirium](http://purl.obolibrary.org/obo/MONDO_0045057)
+ * [ACTH-producing pituitary gland neoplasm](http://purl.obolibrary.org/obo/MONDO_0045058)
+ * [glycogen-rich carcinoma](http://purl.obolibrary.org/obo/MONDO_0045055)
+ * [grade II meningioma](http://purl.obolibrary.org/obo/MONDO_0045056)
+ * [intraductal cribriform breast adenocarcinoma](http://purl.obolibrary.org/obo/MONDO_0045060)
+ * [infectious diarrheal disease](http://purl.obolibrary.org/obo/MONDO_0045031)
+ * [congenital secretory diarrhea](http://purl.obolibrary.org/obo/MONDO_0045032)
+ * [non-infectious diarrheal disease](http://purl.obolibrary.org/obo/MONDO_0045030)
+ * [systemic basidiobolomycosis](http://purl.obolibrary.org/obo/MONDO_0045039)
+ * [hyalohyphomycosis](http://purl.obolibrary.org/obo/MONDO_0045037)
+ * [cutaneous basidiobolomycosis](http://purl.obolibrary.org/obo/MONDO_0045038)
+ * [opportunistic infectious](http://purl.obolibrary.org/obo/MONDO_0045035)
+ * [primary infectious](http://purl.obolibrary.org/obo/MONDO_0045036)
+ * [opportunistic systemic mycosis](http://purl.obolibrary.org/obo/MONDO_0045033)
+ * [infectious disease characteristic](http://purl.obolibrary.org/obo/MONDO_0045034)
+ * [localized](http://purl.obolibrary.org/obo/MONDO_0045042)
+ * [disease of uterine broad ligament](http://purl.obolibrary.org/obo/MONDO_0045043)
+ * [locational disease characteristic](http://purl.obolibrary.org/obo/MONDO_0045040)
+ * [toxemia of pregnancy](http://purl.obolibrary.org/obo/MONDO_0045048)
+ * [hypermature cataract](http://purl.obolibrary.org/obo/MONDO_0045049)
+ * [inherited thyroid metabolism disease](http://purl.obolibrary.org/obo/MONDO_0045046)
+ * [neurosarcoidosis](http://purl.obolibrary.org/obo/MONDO_0045047)
+ * [ligament disease](http://purl.obolibrary.org/obo/MONDO_0045044)
+ * [selective IgG immunodeficiency](http://purl.obolibrary.org/obo/MONDO_0045045)
+ * [obsolete Deuteromycetes infectious disease](http://purl.obolibrary.org/obo/MONDO_0045029)
+
 ## 2018-08-24 release
 
 ### New classes

diff --git a/imports/cl_import.obo b/imports/cl_import.obo
@@ -461,6 +461,20 @@ relationship: RO:0002215 GO:0097186
 relationship: RO:0002220 UBERON:0001763
 relationship: RO:0003000 UBERON:0001752
 
+[Term]
+id: CL:0000062
+name: osteoblast
+namespace: cell
+def: "Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell." [GO_REF:0000034, MESH:A11.329.629]
+comment: non-encoded relationships from VSAO - capable_of_producing VSAO:0000020
+xref: BTO:0001593
+xref: CALOHA:TS-0720
+xref: FMA:66780
+is_a: CL:0000055 ! non-terminally differentiated cell
+is_a: CL:0002320 ! connective tissue cell
+relationship: RO:0002202 CL:0007010 ! preosteoblast
+relationship: RO:0003000 UBERON:0008883
+
 [Term]
 id: CL:0000064
 name: ciliated cell
@@ -6166,6 +6180,19 @@ is_a: CL:0000055 ! non-terminally differentiated cell
 created_by: haendel
 creation_date: 2012-06-27T10:44:01Z
 
+[Term]
+id: CL:0007010
+name: preosteoblast
+namespace: cell
+def: "Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells." [GO_REF:0000034]
+synonym: "osteoprogenitor cell" EXACT []
+is_a: CL:0000055 ! non-terminally differentiated cell
+relationship: BFO:0000050 UBERON:0008883
+relationship: RO:0002202 CL:0000222 ! mesodermal cell
+relationship: RO:0002202 CL:0000333 ! migratory neural crest cell
+created_by: haendel
+creation_date: 2012-06-27T10:57:21Z
+
 [Term]
 id: CL:0008000
 name: non-striated muscle cell

diff --git a/imports/cl_import.owl b/imports/cl_import.owl
@@ -1559,6 +1559,41 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CL_0000062 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000062">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000055"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0002320"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0007010"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0003000"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008883"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell.</obo:IAO_0000115>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BTO:0001593</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CALOHA:TS-0720</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:66780</oboInOwl:hasDbXref>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell</oboInOwl:hasOBONamespace>
+        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">non-encoded relationships from VSAO - capable_of_producing VSAO:0000020</rdfs:comment>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">osteoblast</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000062"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Skeletogenic cell that secretes osteoid, is capable of producing mineralized (hydroxyapatite) matrix, is located adjacent to or within osteoid tissue, and arises from the transformation of a preosteoblast cell.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO_REF:0000034</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MESH:A11.329.629</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/CL_0000064 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000064">
@@ -19257,6 +19292,44 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CL_0007010 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0007010">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CL_0000055"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0008883"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000222"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002202"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CL_0000333"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells.</obo:IAO_0000115>
+        <oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">haendel</oboInOwl:created_by>
+        <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012-06-27T10:57:21Z</oboInOwl:creation_date>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">osteoprogenitor cell</oboInOwl:hasExactSynonym>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell</oboInOwl:hasOBONamespace>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">preosteoblast</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0007010"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO_REF:0000034</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/CL_0008000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0008000">
@@ -21731,6 +21804,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0008883 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0008883"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0009842 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0009842"/>