Skip to content

Commit

Permalink
Temp: Bug fix: Synonym Sync: Entries without exact mappings
Browse files Browse the repository at this point in the history
- Add: Base outputs to compare against after the fix is complete.
  • Loading branch information
joeflack4 committed Nov 20, 2024
1 parent 54a304c commit 72f1862
Show file tree
Hide file tree
Showing 25 changed files with 372,263 additions and 0 deletions.
7,994 changes: 7,994 additions & 0 deletions src/ontology/reports/sync-synonym/doid.synonyms.added.robot.tsv

Large diffs are not rendered by default.

18,630 changes: 18,630 additions & 0 deletions src/ontology/reports/sync-synonym/doid.synonyms.confirmed.robot.tsv

Large diffs are not rendered by default.

5,090 changes: 5,090 additions & 0 deletions src/ontology/reports/sync-synonym/doid.synonyms.updated.robot.tsv

Large diffs are not rendered by default.

1,565 changes: 1,565 additions & 0 deletions src/ontology/reports/sync-synonym/icd10cm.synonyms.added.robot.tsv

Large diffs are not rendered by default.

546 changes: 546 additions & 0 deletions src/ontology/reports/sync-synonym/icd10cm.synonyms.confirmed.robot.tsv

Large diffs are not rendered by default.

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
mondo_id mondo_label synonym_scope_source synonym_scope_mondo synonym synonym_case_diff_mondo synonym_case_diff_source source_id source_label synonym_type synonym_type_mondo mondo_evidence case exact_synonym exact_source_id exact_synonym_type broad_synonym broad_source_id broad_synonym_type narrow_synonym narrow_source_id narrow_synonym_type related_synonym related_source_id related_synonym_type
ID A oboInOwl:hasExactSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasBroadSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasNarrowSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasRelatedSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=|
MONDO:0000462 eye adnexa disorder oio:hasExactSynonym Disorders of eyelid, lacrimal system and orbit ICD10WHO:H00-H06 Disorders of eyelid, lacrimal system and orbit Disorders of eyelid, lacrimal system and orbit ICD10WHO:H00-H06
MONDO:0001609 agranulocytosis oio:hasExactSynonym Agranulocytosis ICD10WHO:D70 Agranulocytosis Agranulocytosis ICD10WHO:D70
MONDO:0003150 male reproductive system disorder oio:hasExactSynonym Diseases of male genital organs ICD10WHO:N40-N51 Diseases of male genital organs Diseases of male genital organs ICD10WHO:N40-N51
MONDO:0004359 delusional disorder oio:hasExactSynonym Delusional disorder ICD10WHO:F22.0 Delusional disorder Delusional disorder ICD10WHO:F22.0
MONDO:0005066 metabolic disease oio:hasExactSynonym Metabolic disorders ICD10WHO:E70-E90 Metabolic disorders Metabolic disorders ICD10WHO:E70-E90
MONDO:0005165 benign neoplasm oio:hasExactSynonym Benign neoplasms ICD10WHO:D10-D36 Benign neoplasms Benign neoplasms ICD10WHO:D10-D36
MONDO:0006672 balanitis oio:hasExactSynonym Balanoposthitis ICD10WHO:N48.1 Balanoposthitis Balanoposthitis ICD10WHO:N48.1
MONDO:0007028 rotator cuff syndrome oio:hasExactSynonym Rotator cuff syndrome ICD10WHO:M75.1 Rotator cuff syndrome Rotator cuff syndrome ICD10WHO:M75.1
MONDO:0013600 insomnia oio:hasExactSynonym Disorders of initiating and maintaining sleep [insomnias] ICD10WHO:G47.0 Disorders of initiating and maintaining sleep [insomnias] Disorders of initiating and maintaining sleep [insomnias] ICD10WHO:G47.0
MONDO:0013600 insomnia oio:hasExactSynonym disorders of initiating and maintaining sleep ICD10WHO:G47.0 Disorders of initiating and maintaining sleep [insomnias] disorders of initiating and maintaining sleep ICD10WHO:G47.0
MONDO:0015079 multiple polyglandular tumor oio:hasExactSynonym Neoplasm of uncertain or unknown behaviour: Pluriglandular involvement ICD10WHO:D44.8 Neoplasm of uncertain or unknown behaviour: Pluriglandular involvement Neoplasm of uncertain or unknown behaviour: Pluriglandular involvement ICD10WHO:D44.8
MONDO:0021645 esophageal varices with bleeding oio:hasExactSynonym Oesophageal varices with bleeding ICD10WHO:I85.0 Oesophageal varices with bleeding Oesophageal varices with bleeding ICD10WHO:I85.0
MONDO:0024318 viral infection of central nervous system oio:hasExactSynonym Viral infections of the central nervous system ICD10WHO:A80-A89 Viral infections of the central nervous system Viral infections of the central nervous system ICD10WHO:A80-A89
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
mondo_id mondo_label synonym_scope_source synonym_scope_mondo synonym synonym_case_diff_mondo synonym_case_diff_source source_id source_label synonym_type synonym_type_mondo mondo_evidence case exact_synonym exact_source_id exact_synonym_type broad_synonym broad_source_id broad_synonym_type narrow_synonym narrow_source_id narrow_synonym_type related_synonym related_source_id related_synonym_type
ID A oboInOwl:hasExactSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasBroadSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasNarrowSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasRelatedSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=|
MONDO:0005027 epilepsy oio:hasExactSynonym epilepsy epilepsy Epilepsy ICD10WHO:G40 Epilepsy http://purl.obolibrary.org/obo/mondo#CLINGEN_LABEL epilepsy ICD10WHO:G40
MONDO:0007950 mastocytosis oio:hasExactSynonym mastocytosis mastocytosis Mastocytosis ICD10WHO:Q82.2 Mastocytosis mastocytosis ICD10WHO:Q82.2
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
mondo_id mondo_label synonym_scope_source synonym_scope_mondo synonym synonym_case_diff_mondo synonym_case_diff_source source_id source_label synonym_type synonym_type_mondo mondo_evidence case exact_synonym exact_source_id exact_synonym_type broad_synonym broad_source_id broad_synonym_type narrow_synonym narrow_source_id narrow_synonym_type related_synonym related_source_id related_synonym_type
ID A oboInOwl:hasExactSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasBroadSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasNarrowSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=| A oboInOwl:hasRelatedSynonym >A oboInOwl:hasDbXref >AI oboInOwl:hasSynonymType SPLIT=|
MONDO:0004985 bipolar disorder oio:hasExactSynonym oio:hasRelatedSynonym bipolar affective disorder bipolar affective disorder Bipolar affective disorder ICD10WHO:F31 Bipolar affective disorder bipolar affective disorder ICD10WHO:F31
Loading

0 comments on commit 72f1862

Please sign in to comment.