Update README.md

fe_calcs_with_3_mg/automation_scripts/README.md

@@ -1,5 +1,6 @@
-# Automation scripts for preparing or running multiple systems at once
+# Automation scripts for preparing or running multiple systems
 
-The scripts in this folder are designed to prepare or run multiple systems at once. Typically we wanted to prepare systems of all 6 ligands and 3 replicates for a selected condition and protocol at once and used these scripts for manipulating a group of system directories at once.
+The scripts in this folder are designed to prepare or run multiple systems at once. Typically we wanted to prepare systems of all 6 ligands and 3 replicates for a selected condition and protocol at once. 
+So we used these scripts to manipulate a group of system directories at once.
 
-Please note that these scripts are collected in this folder for tidiness. Their original location for execution is one folder up (`../`). Before using them please remember to copy all of them one directory up to ensure the relative paths in the scripts function correctly.
+Please note that these scripts are collected in this folder for tidiness. Their original location for execution is the main directory, one folder up (`../`). Before using them please remember to move all of them into the main directory (`fe_calcs_with_3_mg/`) to ensure the relative paths in the scripts function correctly.