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1. GEX-analysis-scMultiomics GEX-analysis-scMultiomics Public

   Multiomics Pipeline by Mo De for FOUNDIN-1c: RNA Analysis Only

   R

2. Linear-Deep-Learning-Latent-Representation-for-iOligo-lineage-scRNAseq- Linear-Deep-Learning-Latent-Representation-for-iOligo-lineage-scRNAseq- Public

   Leveraging the power of LD variational autoencoders to identify latent representations as dim red embeddings of sc data

   Jupyter Notebook

3. Pseudotime-downstream-by-ML Pseudotime-downstream-by-ML Public

   This script utilizes Monocle3 for inferring pseudotime and employs gradient boosting machine learning (xgboost) to identify genes predictive of pseudotime. Subsequently, it fits a regression model …

   R

4. NNMF-for-scRNAseq NNMF-for-scRNAseq Public

   Non negative matrix factorization for Oligo lineage scRNAseq data

   R

5. sc-informed-PRS-analysis sc-informed-PRS-analysis Public

   single cell informed polygenic risk scoring in Parkinson's disease

   R

6. scPseudobulk-analysis- scPseudobulk-analysis- Public

   Automated pipeline for psuedobulk analysis and downstream unsupervised analysis based on seurat v5

   R