fixed up pytdc page

mims-harvard · Feb 8, 2025 · 25705d2 · 25705d2
1 parent b4b5db7
commit 25705d2
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Showing 38 changed files with 57 additions and 48 deletions.
diff --git a/frontend/tdc/src/containers/Home/index.tsx b/frontend/tdc/src/containers/Home/index.tsx
@@ -9,14 +9,14 @@ import SectionDemo from './SectionDemo';
 const HomeContainer: React.FC = () => {
   useEffect(() => {
     // Update the document title client-side
-    handelTitle('TDC2: Multimodal ML Platform for Foundation Models in Therapeutics');
+    handelTitle('PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models');
   }, []);
 
   useEffect(() => {
     // Update body background style client-side
     if (typeof document !== 'undefined') {
       const body = document.getElementsByTagName('body')[0];
-      if (document.title === 'TDC2: Multimodal ML Platform for Foundation Models in Therapeutics') {
+      if (document.title === 'PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models') {
         body.style.backgroundImage =
           'linear-gradient(180deg,#240044 0,#0f0240 25%,#400959 40%,#0f0240 65%,#0f0240)';
       } else {

diff --git a/frontend/tdc/src/data/data-containers/data-HomeDemo1.tsx b/frontend/tdc/src/data/data-containers/data-HomeDemo1.tsx
@@ -62,7 +62,7 @@ export const service_single_content = [
     },
     {
         title:'TDC.ProteinPeptide',
-        content:"Capturing the dynamic nature of protein-peptide interactions requires advanced sampling techniques and computational resources, making the prediction of binding affinities more complex (Antes et al., 2014). TDC-2 provides benchmarks integrating newly discovered peptides to test ML models on their ability to generalize to cutting-edge peptidomimetics.",
+        content:"Capturing the dynamic nature of protein-peptide interactions requires advanced sampling techniques and computational resources, making the prediction of binding affinities more complex (Antes et al., 2014). We provide benchmarks integrating newly discovered peptides to test ML models on their ability to generalize to cutting-edge peptidomimetics.",
         link:'https://tdcommons.ai/multi_pred_tasks/proteinpeptide'
     },
     {

diff --git a/frontend/tdc/src/pages/MyApp.tsx b/frontend/tdc/src/pages/MyApp.tsx
@@ -16,7 +16,7 @@ const Home: React.FC = () => {
     <>
       {/* Head component for metadata */}
       <Head>
-        <meta property="og:title" content="The Commons TDC-2" />
+        <meta property="og:title" content="The Commons PyTDC" />
         <meta property="og:type" content="website" />
         <meta property="og:url" content="https://tdcommons.ai" />
         {/* Uncomment and provide a valid image URL if needed */}

diff --git a/frontend/tdc/src/template/HomeDemo1/SecAboutUs/SecWhoWeContant/index.tsx b/frontend/tdc/src/template/HomeDemo1/SecAboutUs/SecWhoWeContant/index.tsx
@@ -14,7 +14,10 @@ const SecWhoWeContant = () => {
               <Span /> 
             </div>
             <h4 data-aos="fade-up">TDC API-first Architecture</h4>
-            <p data-aos="fade-up">An unprecedented collection of continually updated heterogeneous data sources is unified under the introduced API-first-dataset architecture. This includes a multimodal single-cell RNA data atlas spanning 85M+ cells.</p>
+            <p data-aos="fade-up">A collection of multimodal continually updated heterogeneous data sources is unified under the 
+              introduced &quot;API-first-dataset&quot; architecture. Inspired by API-first design, this microservice architecture is 
+              implemented using the model-view-controller design pattern to enable multimodal data views 
+              under a domain-specific-language.</p>
             <a className="btn dream-btn mt-30" href="https://colab.research.google.com/drive/1xTgBwKUfP2b8j6Fqh28M2GUp2ScfENMX?usp=sharing" style={{borderColor: '#FFDF00'}}>CELLxGENE notebook</a>
         </div>
     </div>

diff --git a/frontend/tdc/src/template/HomeDemo1/SecAboutUsClient/SecWhoWeContant/index.tsx b/frontend/tdc/src/template/HomeDemo1/SecAboutUsClient/SecWhoWeContant/index.tsx
@@ -15,8 +15,14 @@ const SecWhoWeContant = () => {
             <Span /> 
             <Span /> 
             </div>
-            <h4 data-aos="fade-up">TDC Model Server</h4>
-            <p data-aos="fade-up">TDC-2 has released open source inference serving software that streamlines AI inferencing for single-cell foundation models across modalities. The TDC-2 Model Server enables access to an array of context-aware biological foundation models. A model store retrieval API provides unified access to models and weights stored in the HuggingFace Model Hub, CZ CELLxGENE fine-tuned models, and TDC storage. The model server also provides access to tokenizer functions and inference endpoints supporting PyTorch and HuggingFace Transformers.</p>
+            <h4 data-aos="fade-up">PyTDC Model Server</h4>
+            <p data-aos="fade-up">The PyTDC model server streamlines retrieval, inferencing, and training setup for an array 
+              of context-aware biological foundation models and models spanning multiple modalities. A model store retrieval 
+              API provides unified access to model weights stored in the Hugging Face Model Hub (https://huggingface.co/tdc), 
+              Chan-Zuckerberg CELLxGENE Census fine-tuned models, and TDC storage. The model server also provides access to 
+              model classes, tokenizer functions, and inference endpoints supporting PyTorch 
+              and Hugging Face Transformers. Extracted embeddings, from either model server inference or pre-computed embedding 
+              storage, are ready for downstream use by task-specific benchmarking modules.</p>
             <a data-aos="fade-up" className="btn dream-btn mt-30" href="https://huggingface.co/tdc" style={{borderColor: '#FFDF00'}}>HF Model Hub</a>
         </div>
     </div>

diff --git a/frontend/tdc/src/template/HomeDemo1/SecTeam/index.tsx b/frontend/tdc/src/template/HomeDemo1/SecTeam/index.tsx
@@ -19,7 +19,7 @@ const SecTeam: React.FC<SecTeamProps> = () => {
         <div className="row">
           <div className="col-12">
             <SectionHeading
-              title="TDC-2 Team"
+              title="PyTDC Team"
               text="To be disclosed"
               color1="white"
               color2="white"

diff --git a/frontend/tdc/src/template/HomeDemo1/index.tsx b/frontend/tdc/src/template/HomeDemo1/index.tsx
@@ -30,14 +30,14 @@ import {
 
 const HomeDemo1: React.FC = () => {
   useEffect(() => {
-    handelTitle('TDC2: Multimodal ML Platform for Foundation Models in Therapeutics');
+    handelTitle('PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models');
   }, []);
 
   useEffect(() => {
     // Set the body background image client-side
     if (typeof document !== 'undefined') {
       const body = document.getElementsByTagName('body')[0];
-      if (document.title === 'TDC2: Multimodal ML Platform for Foundation Models in Therapeutics') {
+      if (document.title === 'PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models') {
         body.style.backgroundImage =
           'linear-gradient(180deg,#240044 0,#0f0240 25%,#400959 40%,#0f0240 65%,#0f0240)';
       } else {

diff --git a/static/_next/BUILD_ID b/static/_next/BUILD_ID
@@ -1 +1 @@
-1hpZr98Ypoo1d6nPO99F9
+xLubw0YWreOxMGWKJLhC-
diff --git a/static/_next/build-manifest.json b/static/_next/build-manifest.json
@@ -5,27 +5,27 @@
   "devFiles": [],
   "ampDevFiles": [],
   "lowPriorityFiles": [
-    "static/1hpZr98Ypoo1d6nPO99F9/_buildManifest.js",
-    "static/1hpZr98Ypoo1d6nPO99F9/_ssgManifest.js"
+    "static/xLubw0YWreOxMGWKJLhC-/_buildManifest.js",
+    "static/xLubw0YWreOxMGWKJLhC-/_ssgManifest.js"
   ],
   "rootMainFiles": [],
   "rootMainFilesTree": {},
   "pages": {
     "/MyApp": [
-      "static/chunks/webpack-1301bfd2e9d5549e.js",
+      "static/chunks/webpack-2239791ea2adc667.js",
       "static/chunks/framework-a4ddb9b21624b39b.js",
       "static/chunks/main-0bc4b318dd31b414.js",
       "static/chunks/pages/MyApp-9d21fcb3b680109b.js"
     ],
     "/_app": [
-      "static/chunks/webpack-1301bfd2e9d5549e.js",
+      "static/chunks/webpack-2239791ea2adc667.js",
       "static/chunks/framework-a4ddb9b21624b39b.js",
       "static/chunks/main-0bc4b318dd31b414.js",
       "static/css/6a0a91e39cf832a7.css",
-      "static/chunks/pages/_app-480b56ca73c33734.js"
+      "static/chunks/pages/_app-e2da57bafe27ae7b.js"
     ],
     "/_error": [
-      "static/chunks/webpack-1301bfd2e9d5549e.js",
+      "static/chunks/webpack-2239791ea2adc667.js",
       "static/chunks/framework-a4ddb9b21624b39b.js",
       "static/chunks/main-0bc4b318dd31b414.js",
       "static/chunks/pages/_error-fde50cb7f1ab27e0.js"

diff --git a/static/_next/cache/.rscinfo b/static/_next/cache/.rscinfo
@@ -1 +1 @@
-{"encryption.key":"fek+sRnxq11dE7rr0MF//HXJ5avyFzI0CeQWo2RD9fA=","encryption.expire_at":1740256907339}
+{"encryption.key":"qZEeyMibeDXyhBLrCn7uygTCxaref4MOrBO+LgH6VI4=","encryption.expire_at":1740258660558}
diff --git a/static/_next/cache/.tsbuildinfo b/static/_next/cache/.tsbuildinfo
diff --git a/static/_next/cache/eslint/.cache_1vh55ac b/static/_next/cache/eslint/.cache_1vh55ac
diff --git a/static/_next/cache/webpack/client-production/0.pack b/static/_next/cache/webpack/client-production/0.pack
diff --git a/static/_next/cache/webpack/client-production/index.pack b/static/_next/cache/webpack/client-production/index.pack
diff --git a/static/_next/cache/webpack/edge-server-production/index.pack b/static/_next/cache/webpack/edge-server-production/index.pack
diff --git a/static/_next/cache/webpack/server-production/0.pack b/static/_next/cache/webpack/server-production/0.pack
diff --git a/static/_next/cache/webpack/server-production/index.pack b/static/_next/cache/webpack/server-production/index.pack
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		{"encryption.key":"fek+sRnxq11dE7rr0MF//HXJ5avyFzI0CeQWo2RD9fA=","encryption.expire_at":1740256907339}
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