.gitignore

########## GIT AVOID TRACKING THESE FILES ##########

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
db.sqlite3
migrations/
media/
settings.py

# C extensions
*.so

# Avoiding Mac OS X .DS_Store files
.DS_Store
data/.DS_Store
results/.DS_Store
src/.DS_Store
utility/.DS_Store

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg

# Sphinx documentation
devDocs/build/

.ipynb_checkpoints


# pwiz installer
#pwiz-bin-windows-*.tar.bz2
#sqlite-netFx-full-source-*.zip

# Editor backup files
*~

# sourcetrail generated files
.nmdc_vis.srctrlbm
.nmdc_vis.srctrldb
.nmdc_vis.srctrlprj
.nmdc.srctrlbm
.nmdc.srctrldb
.nmdc.srctrlprj
.nmdc_review.srctrlbm
.nmdc_review.srctrldb
.nmdc_review.srctrlprj

# Meta_data output file
../workflow.json
../output.json

.idea/
venv/
#storage/*
#storage/data/*
#storage/results/*
#storage/fastas/*

src/metadata_collection/benchmark/*
wdl/cromwell/*

cromwell-executions/
.vscode/
.venv/
cromwell-workflow-logs/