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Minor update
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TuomasBorman committed Sep 26, 2024
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4 changes: 2 additions & 2 deletions docs/mgnifyr.html
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Expand Up @@ -355,8 +355,8 @@ <h2>Data availability</h2>
<li>Application Programming Interface (API)</li>
</ul>
</section>
<section id="problem-in-api" class="slide level2">
<h2>Problem in API</h2>
<section id="challenges-in-api" class="slide level2">
<h2>Challenges in API</h2>
<ul>
<li>Requires familiarity with API workflows, database structures, and linkages.</li>
<li>Leads to challenges in reproducibility and time-consuming data wrangling.</li>
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7 changes: 7 additions & 0 deletions docs/search.json
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Expand Up @@ -1615,5 +1615,12 @@
"title": "MGnifyR: An R package for accessing MGnify microbiome data",
"section": "Bioconductor and MGnifyR",
"text": "Bioconductor and MGnifyR\n\nMicrobial and functional profiling data is retrieved as TreeSE/MAE format.\nCommon data format supported broadly by Bioconductor.\nEnables direct access to cutting-edge tools (e.g. miaverse)."
},
{
"objectID": "mgnifyr.html#challenges-in-api",
"href": "mgnifyr.html#challenges-in-api",
"title": "MGnifyR: An R package for accessing MGnify microbiome data",
"section": "Challenges in API",
"text": "Challenges in API\n\nRequires familiarity with API workflows, database structures, and linkages.\nLeads to challenges in reproducibility and time-consuming data wrangling."
}
]
2 changes: 1 addition & 1 deletion quarto/mgnifyr.qmd
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- Taxonomy and functional mappings along with genome catalogues
- Application Programming Interface (API)

## Problem in API
## Challenges in API

- Requires familiarity with API workflows, database structures, and linkages.
- Leads to challenges in reproducibility and time-consuming data wrangling.
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