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@mesoSPIM

mesoSPIM

Mesoscale light-sheet microscopes for imaging in cleared tissue.

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  1. benchtop-hardware Public

    Hardware documentation for mesoSPIM-Bechtop microscope project

    HTML 23 5

  2. mesoSPIM-control Public

    Image acquisition software for mesoSPIM light-sheet microscopes.

    Jupyter Notebook 41 12

  3. mesoSPIM-hardware-documentation Public

    Hardware documentation for the mesoSPIM microscope project

    34 4

  4. mesoSPIM-PSFanalysis Public

    Analysis code for light-sheet PSFs

    Jupyter Notebook 4

Repositories

Showing 10 of 12 repositories
  • mesoSPIM-control Public

    Image acquisition software for mesoSPIM light-sheet microscopes.

    Jupyter Notebook 41 GPL-3.0 12 6 1 Updated Apr 7, 2025
  • benchtop-hardware Public

    Hardware documentation for mesoSPIM-Bechtop microscope project

    HTML 23 GPL-3.0 5 0 0 Updated Apr 1, 2025
  • image-processing Public

    Collection of python notebooks for mesoSPIM image processing (file format conversion, etc)

    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 27, 2025
  • mesoSPIM-hardware-documentation Public

    Hardware documentation for the mesoSPIM microscope project

    34 GPL-3.0 4 2 0 Updated Oct 18, 2024
  • optical-simulations Public

    Proof of principle simulations of excitation and detection optical arms in mesoSPIM systems

    1 GPL-3.0 0 0 0 Updated May 30, 2024
  • mesoSPIM-PSFanalysis Public

    Analysis code for light-sheet PSFs

    Jupyter Notebook 4 MIT 0 1 0 Updated Mar 18, 2024
  • mesoSPIM-lazy-loader Public

    Lazy loader napari plugin for mesoSPIM datasets

    Python 2 GPL-3.0 0 3 0 Updated Apr 6, 2023
  • mesoSPIM-python-tools Public

    Collection of general-purpose tools for handling mesoSPIM data with Python.

    Python 0 BSD-3-Clause 0 0 0 Updated Apr 6, 2023
  • pipython Public Forked from royerlab/pipython

    PIPython is a collection of Python modules to access a PI device and process GCS data.

    Python 0 3 0 0 Updated Oct 14, 2019
  • mesoSPIMmat Public

    MATLAB tools for handling mesoSPIM data

    MATLAB 4 GPL-3.0 0 1 0 Updated Sep 16, 2019
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