- Add duplicated read check
- Log read ID and read source (mapped/unmapped)
- [PacBio] Add VCF output option for PacBio mode
- [PacBio] Add a flag to log Pacbio reads
- Performance improvement (calling viterbi algorithm)
- [pairwise_alignment generator] support read_id and read_source (mapped/unmapped)
- Bug fixes on VNTR DB manipulation
- Minor bug fixes