R_code

Repository containing code I have written in R for transcriptome analysis.

File Contents:

• DESeq.Rmd: This markdown file contains raw code for differenetial expression analysis of transcriptomic data. Full code with output plots can be found HERE.
• UpSetR_script.Rmd: This markdown file contains raw code for implementation of UpSetR (program used to find intersections). Full code with plots can be found HERE.
• OrthoFinder_Analysis.Rmd: This markdown file contains raw code for analysis of OrthoFinder results. Presents results in both heatmaps and venn diagrams (ggVennDiagram). Full code with plots can be found HERE.