Skip to content
View massiddamt's full-sized avatar
7 followers · 14 following

Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Organizations

@solida-core @next-crs4 @GeneBANGS

Block or report massiddamt

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
massiddamt/README.md

Hi there, I'm Matteo 👋

I am a bioinformatician post-doc at IRGB-CNR in Cagliari, Italy.

I started my academic career as a molecular biologist, working with DNA analysis techniques such as extraction, PCR, RFLP, Sanger sequencing, and NGS.

Over the past eight years, I have specialized in bioinformatics, mainly focusing on NGS data analysis and the development of scalable and reproducible bioinformatics workflows using Snakemake.

During my time at CRS4, I contributed to the creation of a set of publicly available bioinformatics pipelines, now part of the solida-core collection.

From 2022 to September 2024, I worked at the University of Sassari (Department of Medical, Surgical, and Experimental Sciences). During this period, I collaborated with colleagues at IRGB-CNR in Cagliari, contributing to the development of GeneBANGS, a collection of reproducible bioinformatics pipelines, available on GitHub: GeneBANGS.

Since September 2024, I have been working as a post-doc bioinformatician at IRGB-CNR in Cagliari, where I am involved in multiple research projects. My main focus includes: • Transcriptome, mirnome analysis of CRC patients for the identification of prognostic markers. • Exome and genome analysis in projects related to the study of complex diseases.

If you’re interested in a collaboration, feel free to contact me via email at [email protected].

Thanks, Matteo

Pinned Loading

  1. rna_vc_docker rna_vc_docker Public

    A Snakemake pipeline for RNA Seq Variant Calling

    Python 2

  2. GeneBANGS/RNASeq GeneBANGS/RNASeq Public

    A Snakemake pipeline for RNASeq data analysis

    Python

  3. solida-core/musta solida-core/musta Public

    MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

    Python

  4. solida-core/diva solida-core/diva Public

    DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis

    Python 1 6