fix docs / upgrade docs to Julia 1.6

marius311 · Apr 14, 2021 · 4078ca2 · 4078ca2 · marius311 · Apr 15, 2021
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Showing 5 changed files with 13 additions and 11 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -28,7 +28,7 @@ RUN apt-get update \
 
 ## install julia
 RUN mkdir /opt/julia \
-    && curl -L https://julialang-s3.julialang.org/bin/linux/x64/1.5/julia-1.5.3-linux-x86_64.tar.gz | tar zxf - -C /opt/julia --strip=1 \
+    && curl -L https://julialang-s3.julialang.org/bin/linux/x64/1.6/julia-1.6.0-linux-x86_64.tar.gz | tar zxf - -C /opt/julia --strip=1 \
     && chown -R 1000 /opt/julia \
     && ln -s /opt/julia/bin/julia /usr/local/bin
 
@@ -50,10 +50,12 @@ RUN curl https://pyenv.run | bash \
     && pyenv global 3.7.3
 
 ## install Python packages
+# see https://github.com/jupyter/jupyter_client/issues/637 re: jupyter-client==6.1.12
 RUN pip install --no-cache-dir \
         cython \
         julia \
-        jupyterlab==3 \
+        "jupyterlab>=3" \
+        jupyter-client==6.1.12 \
         jupytext \
         matplotlib \
         "nbconvert<6" \
@@ -88,7 +90,7 @@ COPY --chown=1000 Project.toml $HOME/CMBLensing/
 COPY --chown=1000 docs/Project.toml $HOME/CMBLensing/docs/
 RUN mkdir $HOME/CMBLensing/src && touch $HOME/CMBLensing/src/CMBLensing.jl
 ENV JULIA_PROJECT=$HOME/CMBLensing/docs
-RUN julia -e 'using Pkg; pkg"dev ~/CMBLensing; instantiate"' \
+RUN JULIA_PKG_PRECOMPILE_AUTO=0 julia -e 'using Pkg; pkg"dev ~/CMBLensing; instantiate"' \
     && rm -rf $HOME/.julia/conda/3/pkgs
 COPY --chown=1000 src $HOME/CMBLensing/src
 RUN (test $PRECOMPILE = 0 || julia -e 'using Pkg; pkg"precompile"')

diff --git a/docs/src/01_lense_a_map.md b/docs/src/01_lense_a_map.md
@@ -8,9 +8,9 @@ jupyter:
       format_version: '1.2'
       jupytext_version: 1.4.1
   kernelspec:
-    display_name: Julia 1.5.3
+    display_name: Julia 1.6.0
     language: julia
-    name: julia-1.5
+    name: julia-1.6
 ---
 
 # Lensing a flat-sky map

diff --git a/docs/src/02_posterior.md b/docs/src/02_posterior.md
@@ -8,9 +8,9 @@ jupyter:
       format_version: '1.2'
       jupytext_version: 1.4.1
   kernelspec:
-    display_name: Julia 1.5.3
+    display_name: Julia 1.6.0
     language: julia
-    name: julia-1.5
+    name: julia-1.6
 ---
 
 # The Lensing Posterior

diff --git a/docs/src/03_joint_MAP_example.md b/docs/src/03_joint_MAP_example.md
@@ -7,9 +7,9 @@ jupyter:
       format_version: '1.2'
       jupytext_version: 1.4.1
   kernelspec:
-    display_name: Julia 1.5.3
+    display_name: Julia 1.6.0
     language: julia
-    name: julia-1.5
+    name: julia-1.6
 ---
 
 # MAP estimation

diff --git a/docs/src/05_field_basics.md b/docs/src/05_field_basics.md
@@ -7,9 +7,9 @@ jupyter:
       format_version: '1.2'
       jupytext_version: 1.4.1
   kernelspec:
-    display_name: Julia 1.5.3
+    display_name: Julia 1.6.0
     language: julia
-    name: julia-1.5
+    name: julia-1.6
 ---
 
 # Field Basics