Kamping integration #2
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added supposedly missing header in some macos builds
…r scaling/normalization (eg #86)
…stribution has no clear peak
… are NOT affected)
…h is running (use '--nofiles interim' to disable)
… counter overflow, account for DRAM, can now be disabled with '--extra energy-off')
…able, ignore all subzones except DRAM)
- parsimony starting tree construction used to be very inefficient, now runs 20x-30x faster
… (#56 and beyond)
Usage:
`--threads 16` = use exactly 16 threads
`--threads auto{16}` = use "optimal" #threads for the dataset at hand, up to 16
`--threads auto` = use "optimal" #threads for the dataset at hand, up to #CPU cores
`--workers 8` = use exactly 8 parallel tree searches
`--workers auto{8}` = use "optimal" #parallel tree searches, up to 8
`--workers auto` = use "optimal" #parallel tree searches
Default now:
`--threads auto --workers 1`
Default for release:
`--threads auto --workers auto`
…traint - fix assertion when rooting a multifurcating tree (#130)
…dom starting trees by default
…ce model_rate_scalers` is specified (#133)
…mammal, Q.plant, Q.yeast (details: https://doi.org/10.1093/sysbio/syab010)
…be-nature method (default). Fixed by fallback to tbe-naive method in `--all` mode. `--support` mode not affected.
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