R code for the project Eligibility PARAGON KaRen

The aim of this R code is to be transparant and document the data handling performed for the project Eligibility PARAGON in KaRen.

Language

English (sprinkled with Swedish).

Data

The data consists of European individual patient data and is not public, and therefore no data is stored in this repository.

Instructions

The project uses the R package projectTemplate, http://projecttemplate.net/ and is structured (and run) accordingly. Renv, https://rstudio.github.io/renv/articles/renv.html, is used for management of package dependencies.

Since the data is not available the code can not be run as is.

Workflow:

1. Run src/load_munge_cache.R or set loading and munging options in ProjectTemplate::reload.project() to TRUE in Statistical_report_PARAGONKaRen.Rmd
2. Run Statistical_report_PARAGONKaRen.Rmd

Publication

https://onlinelibrary.wiley.com/doi/10.1002/ehf2.13705