Skip to content

Pull requests: lh3/bwa

New pull request New
24 Open 106 Closed
24 Open 106 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

performance increase in alignment
#279 opened Apr 23, 2020 by andreasbuhr Loading…
7
set optimization from -O2 to -O3, 3.4 % performance increase observed
#278 opened Apr 22, 2020 by andreasbuhr Loading…
1
Update bwape.c to allow equal reads in pair to be mapped as mapped in proper pair
#259 opened Nov 25, 2019 by schultzdre Loading…
Fix potential assertion in bntseq fails #120
#243 opened Jun 25, 2019 by yanlinlin82 Loading…
1
fix incorrect secondary alignment in ksw_align
#227 opened Dec 5, 2018 by mirounga Loading…
bwa mem 20% speedup with vector instructions (Fixed intel-extend branch)
#226 opened Nov 24, 2018 by zamaudio Loading…
1
Add -C param for sampe/samse, to copy fastq comments into sam output
#203 opened May 30, 2018 by grahamgower Loading…
Proposed enhancement to the FAQ with a line for -M
#198 opened May 9, 2018 by mdkeehan Loading…
2
bwa mem: print qtip features
#156 opened Oct 17, 2017 by BenLangmead Loading…
1
bwa mem: read chunk size overflows for -t > 214
#155 opened Oct 17, 2017 by BenLangmead Loading…
Allow larger chunks of reads to be processed, and estimate the insert…
#106 opened Jan 29, 2017 by rbh Loading…
PPC64 patches
#71 opened Jun 10, 2016 by yhcheng Loading…
15
Bwa-Mem and tied pair-placements
#42 opened May 6, 2015 by boukn Loading…
mmap'ed access to reference files
#40 opened Jan 23, 2015 by ilveroluca Loading…
1
Add documentation describing the output format of out.hla.* files (doc fix only)
#39 opened Jan 5, 2015 by heuermh Loading…
3
Use allele instead of gene where appropriate (doc fix only)
#38 opened Jan 5, 2015 by heuermh Loading…
-q option to put seq/qual strings in secondary alignments
#36 opened Nov 12, 2014 by EReckase Loading…
Standard Fastq output for pemerge
#34 opened Oct 10, 2014 by a113n Loading…
Update bwape.c
#29 opened Jul 9, 2014 by earonesty Loading…
Fixed output, as newlines were missing.
#22 opened Feb 6, 2014 by jvhaarst Loading…
3
Added filenames to "Unmatched SAI magic" message
#20 opened Nov 12, 2013 by zestrada Loading…
Fix bam IO to take account of BAM_FPAIRED when checking BAM_FREAD1/2
#18 opened Jun 13, 2013 by mp15 Loading…
1
Adds check that ref sequence names do not contain semicolon during index
#16 opened May 20, 2013 by vsbuffalo Loading…
Adding a flag to sampe (-d) to disable pair rescuing if too many rescue attempts are made.
#12 opened Sep 30, 2012 by drio Loading…
3
ProTip! Updated in the last three days: updated:>2025-03-18.