Merge pull request #291 from lindenb/pl_strlen

lh3 · web-flow · commit 951b93ed8ac5 · 2025-03-21T15:42:43.000-04:00
change strlen to  seq-&gt;name.l
diff --git a/bwaseqio.c b/bwaseqio.c
@@ -205,7 +205,7 @@ bwa_seq_t *bwa_read_seq(bwa_seqio_t *bs, int n_needed, int *n, int mode, int tri
 		seq_reverse(p->len, p->rseq, is_comp);
 		p->name = strdup((const char*)seq->name.s);
 		{ // trim /[12]$
-			int t = strlen(p->name);
+			int t = seq->name.l;
 			if (t > 2 && p->name[t-2] == '/' && (p->name[t-1] == '1' || p->name[t-1] == '2')) p->name[t-2] = '\0';
 		}
 		if (n_seqs == n_needed) break;

Original file line number	Diff line number	Diff line change
`@@ -205,7 +205,7 @@ bwa_seq_t bwa_read_seq(bwa_seqio_t bs, int n_needed, int *n, int mode, int tri`
`205`	`205`	`seq_reverse(p->len, p->rseq, is_comp);`
`206`	`206`	`p->name = strdup((const char*)seq->name.s);`
`207`	`207`	`{ // trim /[12]$`
`208`		`- int t = strlen(p->name);`
	`208`	`+ int t = seq->name.l;`
`209`	`209`	`if (t > 2 && p->name[t-2] == '/' && (p->name[t-1] == '1' \|\| p->name[t-1] == '2')) p->name[t-2] = '\0';`
`210`	`210`	`}`
`211`	`211`	`if (n_seqs == n_needed) break;`