SynTrackerVis Version 1.0.8

Version 1.0.8

• The network customization options area was changed, so that the layout parameters are now grouped together and appear first.
• Fixed a bug related to the inclusion of 'All regions' option when selecting a subset of species.
• Added explanation about saving options of the network.

SynTrackerVis Version 1.0.7

Version 1.0.7:

• Added a condition for the version of Panel to the SynTrackerVis.yml environment file in order to avoid installing older versions.
• Fixied problems related to watching and unwatching of contig-related widgets.
• Added the section 'Open several SynTrackerVis sessions' to the manual and README.md.

SynTrackerVis Version 1.0.6

Version 1.0.6:

• Removed syncing query parameters 'input_file' and 'ref_genome' to the URL (it caused problems when reloading the page using CTRL-R).
• Check if watchers exist before unwatching parameters (caused many warnings).
• Removed unnecessary printouts

SynTrackerVis Version 1.0.5

Version 1.0.5:

• Fixed the subsampling slider bug in multi-genomes visualization (when moving from all genomes presentation to a subset and the option 'All regions' should be added to the slider).
• Finished writing manual.md.
• Changed the appearance of the tabs.
• Replaced the header buttons with ToggleGroup widget.

SynTrackerVis Version 1.0.4

Version 1.0.4:
Synteny per position analysis: added the option to filter the plot (show only) by specific groups of a selected metadata feature.

SynTrackerVis Version 1.0.3

Version 1.0.3:
Clustered heatmap analysis:

• Added the option to color the rows by metadata feature.

SynTrackerVis Version 1.0.2

Version 1.0.2:
Multi genomes visualisation:

• Added the option sort the genomes list for subset selection by number of compared pairs or by names.
• Fixed incorrect file names for download.
• Fixed colormaps names.

SynTrackerVis Version 1.0.1

Version 1.0.1:

• In the network plot: added the option to define a custom colormap when using metadata with categorical features.

SynTrackerVis Version 1.0.0

Version 1.0.0 (first official release of SynTrackerVis):

• Added detailed manual file manual.md that can be viewed from the application.
• Changed the calculation of hypervariable and hyperconserved regions in the 'Synteny per position' analysis.
• Updated README.md.

SynTrackerVis Version 0.4.0-alpha

Version 0.4.0-alpha:

• Added the possibility to download the data tables for each plot.
• Improved the network and changed the save plot as image option, so that the plot will be saved using Matplotlib in higher resolution and in several formats.
• Run the calculations required for coverage plot in a different thread in the background, in order to present the initial plots display faster.