Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

segmentation fault (core dumped) #70

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

monsanto-pinheiro
Copy link

@monsanto-pinheiro monsanto-pinheiro commented Feb 26, 2023

If you have all regions smaller than 78 (1260 >> kPSS), with coverage grather or equal ot 4, you don't have any valid "pile". When you try to calculate the median, a segmentation fault is raised. This solution avoids this, but I think it is better to inform the user about the lack of overlap because none contigs will be generated.

Datasets: ERR4082025 and ERR4082026

If you have all regions smaller than 78 (1260 >> kPSS), with coverage grather or equal ot 4, you don't have any valid "pile".
When you try to calculate the median, a segmentation fault is raised.
This solution avoids this, but I think it is better to inform the user about the lack of overlap because none contigs will be generated.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant