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Add basic CELLxGENE workflow #75

Merged
merged 12 commits into from
Nov 20, 2024
Merged

Add basic CELLxGENE workflow #75

merged 12 commits into from
Nov 20, 2024

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lazappi
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@lazappi lazappi commented Nov 12, 2024 •
edited by rcannood
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Add a vignette showing basic usage of the CELLxGENE instance

Current outline:

  • Introduction
  • Connect to the default instance
  • Start tracking
  • Connect to CELLxGENE
  • Find a dataset
  • Load the dataset
  • Create a Seurat object
  • Calculate marker genes using provided labels
  • Save the data frame of results
  • Write the Seurat to disk
  • Save the Seurat file
  • End tracking

@rcannood rcannood marked this pull request as ready for review November 20, 2024 12:15
@rcannood rcannood merged commit 99bc21b into main Nov 20, 2024
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@rcannood rcannood deleted the add-cellxgene-workflow branch November 20, 2024 12:21
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@lazappi @falexwolf @rcannood