README.md

Resources

Python

• Exercises
• Solutions
• Slides

Recommended resources for learning python on your own and/or refreshing your skills

• Interactive tutorial at DataCamp (only free parts)
• Interactive tutorial at Learn Python (skip advanced part)
• Python for Biologists: covers same topics that were covered in the Python basics part of the course LACDR course

Recommended resources for data analysis in Python

• Python data science handbook
• Matplotlib tutorial
• Seaborn tutorial
• Jupyter notebook introduction
• Effective Pandas
• Cheat sheets (R and Python)

R

• classes and variables
• data objects
• control flow and repetition
• functions
• dplyr & tidyr
• reshaping data
• visualization
• read and write

Software

Requirements for server setup

Each txt contains the libraries that are needed from the matching repository. So, if an extra requirement is needed, add this to the correct(!) file.

Python - conda environment

1. Create environment

conda env create -f conda_env_BPiDD.yml

2. Add kernel to notebook kernels visible in Jupyter:

python -m ipykernel install --user --name BPiDD --display-name "Python3 (BPiDD)"