Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 176 followers
- Stanford University
- https://kundajelab.github.io/
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chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
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- scATAC-reprog Public
Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" by Nair, Ameen et al.
kundajelab/scATAC-reprog’s past year of commit activity - gp_mouse Public
kundajelab/gp_mouse’s past year of commit activity - Fi-NeMo Public
Identifying transcription factor binding sites from neural network contribution scores
kundajelab/Fi-NeMo’s past year of commit activity - MotifCompendium Public
kundajelab/MotifCompendium’s past year of commit activity - bpnet-refactor Public
kundajelab/bpnet-refactor’s past year of commit activity
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