Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
- 176 followers
- Stanford University
- https://kundajelab.github.io/
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chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
Repositories
Showing 10 of 185 repositories
- bpnet Public
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
kundajelab/bpnet’s past year of commit activity - bpnet-refactor Public
kundajelab/bpnet-refactor’s past year of commit activity - tfmodisco-lite Public Forked from jmschrei/tfmodisco-lite
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
kundajelab/tfmodisco-lite’s past year of commit activity - MotifCompendium Public
kundajelab/MotifCompendium’s past year of commit activity - chrombpnet Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
kundajelab/chrombpnet’s past year of commit activity
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