Crawl_pubmed

TODO

https://ftp.ncbi.nlm.nih.gov/pub/pmc/

Version 3.0.0 Last update: 9/15/2020.

python fetch_pdfs.py [-pmids or -pmf] [optional arguments]

Example script usage:

python fetch_pdfs.py -pmids 123,124,125,23923,111

https://stackoverflow.com/questions/37804479/how-to-download-full-article-text-from-pubmed https://github.com/billgreenwald/Pubmed-Batch-Download

#TODO zip folder data , cho len colab chạy python negative_pubmed.py

trong lúc craw, 1 tiếng dừng 1 lần để xem đc bn pmid, ~100k là dừng làm sk learn để classify text, dùng logistic regression

Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
.idea		.idea
data		data
lib		lib
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
__init__.py		__init__.py
convertPDF2txt.py		convertPDF2txt.py
crawl_a_paper.py		crawl_a_paper.py
crawl_trending.py		crawl_trending.py
download_from_pmc.py		download_from_pmc.py
fetch_pdfs.py		fetch_pdfs.py
mass_crawl.py		mass_crawl.py
negative_pubmed.py		negative_pubmed.py
requirements.txt		requirements.txt
split_folder_data2subfold.py		split_folder_data2subfold.py
statitic_keyword.py		statitic_keyword.py
usingDOI_download_Scihub.py		usingDOI_download_Scihub.py
usingDOI_download_hgmd.py		usingDOI_download_hgmd.py