[WIP] Refactoring and cleanup#49

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Squareys wants to merge 25 commits intomasterfrom

refactoring-and-cleanup

Commits on Sep 6, 2016

Refactor scijava integration

dietzc
authored and
Squareys
committed

Commits on Sep 12, 2016

Commits on Sep 14, 2016

Remove unused imports
Squareys
committed

Commits on Sep 26, 2016

Use better way of detecting synthetic "result" ouput
Squareys
committed

Commits on Dec 4, 2016