mimic-profiles

FHIR profiles for MIMIC-IV. The MIMIC-IV and MIMIC-IV-ED databases have been modelled as FHIR resources. The process to generate the full implementation guide with resources is:

1. Set up FSH and SUSHI - SUSHI Setup Guide

• Install Node.js (needed for SUSHI): https://nodejs.org/en/
  • Check node.js is properly set up: node --version or npm --version
• Install SUSHI: npm install -g fsh-sushi

2. Generate FHIR resources from FSH

• In the main directory of the repo run sushi .
• This command will generate the FHIR resources from the FSH files

3. Set up the IG Publisher

• [Install Jekyll)(https://jekyllrb.com/docs/installation/) (need for the IG html output)
• Run ./_updatePublisher.sh from the top of the repository to get the latest IG Publisher
  • If _updatePublisher.sh does not work you can manually download the IG publisher

4. Generate the mimic-fhir implementation guide

• Run ./_genonce.shfrom the top of the repository to generate the mimic-fhir IG