resolve dependencies in isolated conda envs

khanlab · Jan 17, 2025 · c04ba2e · c04ba2e
1 parent 3ad38bf
commit c04ba2e
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Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/hippunfold/workflow/envs/env1.yaml b/hippunfold/workflow/envs/env1.yaml
@@ -9,3 +9,4 @@ dependencies:
   - nibabel>=3.2.1
   - scikit-fmm>=2022.03.26
   - scipy=1.7.1
+  - pandas>=1.2.0,<1.3.0
diff --git a/hippunfold/workflow/envs/env10.yaml b/hippunfold/workflow/envs/env10.yaml
@@ -8,4 +8,4 @@ dependencies:
   - nibabel>=3.2.1
   - numpy
   - scipy=1.7.1
-  - astropy>=4.0,<4.3.1
+  - astropy
diff --git a/hippunfold/workflow/rules/warps.smk b/hippunfold/workflow/rules/warps.smk
@@ -441,7 +441,7 @@ rule create_warps_hipp:
     container:
         config["singularity"]["autotop"]
     conda:
-        "../envs/env1.yaml"
+        "../envs/env10.yaml"
     script:
         "../scripts/create_warps.py"
 
@@ -568,7 +568,7 @@ rule create_warps_dentate:
     container:
         config["singularity"]["autotop"]
     conda:
-        "../envs/env1.yaml"
+        "../envs/env10.yaml"
     script:
         "../scripts/create_warps.py"