fix for input type in dseg qc (#226)

* fix wrong input type in dseg qc A return statement in the `get_bg_img_for_subfield_qc()` function had an extra set of parentheses around the `bids()` call, which was making it return a tuple instead of a string. This fixes that, and removes the other fix that fixed this issue downstream. --------- Co-authored-by: Jordan DeKraker - B. Bernhardt Lab <[email protected]> Co-authored-by: Ali Khan <[email protected]>
khanlab · Mar 5, 2023 · 7457100 · 7457100
1 parent c29b03a
commit 7457100
Showing 1 changed file with 7 additions and 9 deletions.
diff --git a/hippunfold/workflow/rules/qc.smk b/hippunfold/workflow/rules/qc.smk
@@ -116,15 +116,13 @@ def get_bg_img_for_subfield_qc(wildcards):
         )
     elif config["modality"] == "cropseg":
         # blank image as bg
-        return (
-            bids(
-                root=work,
-                datatype="warps",
-                suffix="cropref.nii.gz",
-                space="{space}",
-                hemi="{hemi}",
-                **config["subj_wildcards"],
-            ),
+        return bids(
+            root=work,
+            datatype="warps",
+            suffix="cropref.nii.gz",
+            space="{space}",
+            hemi="{hemi}",
+            **config["subj_wildcards"],
         )
 
     elif config["modality"][:3] == "seg":