deploy: 6e78627

khanlab · Dec 19, 2024 · d52fdac · d52fdac
1 parent f78ca56
commit d52fdac
Show file tree

Hide file tree

Showing 24 changed files with 376 additions and 41 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 5747b9dbbfe039856380c066378d4c2d
+config: d37d2aedbeef47075227bd2b24b3d731
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/API/algs.html b/API/algs.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/im/algs &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/im/algs &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
@@ -53,6 +53,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">

diff --git a/API/napari_zarr.html b/API/napari_zarr.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/ome_zarr/napari/add.py &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/ome_zarr/napari/add.py &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,14 +15,14 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="cvpl_tools/ome_zarr/io.py" href="ome_zarr_io.html" />
-    <link rel="prev" title="Beta-Amyloid Plaque Detection" href="../GettingStarted/beta_amyloid_plaque_detection.html" /> 
+    <link rel="prev" title="Dev Setup" href="../GettingStarted/dev_setup.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -54,6 +54,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">
@@ -159,7 +160,7 @@
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="../GettingStarted/beta_amyloid_plaque_detection.html" class="btn btn-neutral float-left" title="Beta-Amyloid Plaque Detection" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../GettingStarted/dev_setup.html" class="btn btn-neutral float-left" title="Dev Setup" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="ome_zarr_io.html" class="btn btn-neutral float-right" title="cvpl_tools/ome_zarr/io.py" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 

diff --git a/API/ndblock.html b/API/ndblock.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/im/ndblock.py &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/im/ndblock.py &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
@@ -54,6 +54,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">

diff --git a/API/ome_zarr_io.html b/API/ome_zarr_io.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/ome_zarr/io.py &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/ome_zarr/io.py &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
@@ -54,6 +54,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">

diff --git a/API/seg_process.html b/API/seg_process.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/im/seg_process.py &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/im/seg_process.py &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
@@ -54,6 +54,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">

diff --git a/API/tlfs.html b/API/tlfs.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>cvpl_tools/tools/fs.py &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>cvpl_tools/tools/fs.py &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,7 +15,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
@@ -54,6 +54,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/result_caching.html">Result Caching</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/nnunet.html">nn-UNet</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../GettingStarted/beta_amyloid_plaque_detection.html">Beta-Amyloid Plaque Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../GettingStarted/dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul class="current">

diff --git a/GettingStarted/beta_amyloid_plaque_detection.html b/GettingStarted/beta_amyloid_plaque_detection.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Beta-Amyloid Plaque Detection &mdash; cvpl_tools 0.8.3 documentation</title>
+  <title>Beta-Amyloid Plaque Detection &mdash; cvpl_tools 1.0.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
@@ -15,13 +15,13 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=5dec0a16"></script>
+        <script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js?v=af2ce170"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=4825356b"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="cvpl_tools/ome_zarr/napari/add.py" href="../API/napari_zarr.html" />
+    <link rel="next" title="Dev Setup" href="dev_setup.html" />
     <link rel="prev" title="nn-UNet" href="nnunet.html" /> 
 </head>
 
@@ -58,6 +58,7 @@
 <li class="toctree-l2"><a class="reference internal" href="#python-implementation">Python Implementation</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="dev_setup.html">Dev Setup</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
 <ul>
@@ -251,7 +252,7 @@ <h2>Python Implementation<a class="headerlink" href="#python-implementation" tit
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="nnunet.html" class="btn btn-neutral float-left" title="nn-UNet" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="../API/napari_zarr.html" class="btn btn-neutral float-right" title="cvpl_tools/ome_zarr/napari/add.py" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="dev_setup.html" class="btn btn-neutral float-right" title="Dev Setup" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>