betadiv-enp

Code, data, and author's manuscript accompanying the publication:

Karlo G. Guidoni-Martins , Leandro Maracahipes , Adriano S. Melo , Marcus V. Cianciaruso . Annual fires reduce local species richness but do not homogenize the composition of savanna woody species. Published in Flora, 2 June 2021 https://doi.org/10.1016/j.flora.2021.151868

Overview

This repository host the code, data, and manuscript source of the publication mentioned above.

We adopt a routine to ensure that all statistical analyses and the production of the figures using the R environment are reproducible. Thus, users interested in checking these steps have three alternatives:

1. Clone or download this repository, and build the manuscript with devtools::install(); rmarkdown::render("main-script.Rmd");

2. Browse to GitHub Actions to review the build of the latest version of the manuscript and get the latest uploaded artifact (rendered versions of both the manuscript and the analysis report);

3. Pull the docker image based on this repository that delivers the rendered versions of both the manuscript and the analysis report.

Repository structure

The tree below represent how files are organized (only the relevant files are shown).

betadiv-enp/
├── data/           # stores all the data used in the manuscript
├── main-script.Rmd # main text of the publication
├── manuscript/     # stores manuscript helper as citation style and bibliography
├── output/         # stores tables, figures, and appendices.
└── R/              # stores analysis routines and custom functions

Acknowledgements

This research was funded by CNPq, CAPES, and FAPEG.

We also thank the amazing #rstats community, making it possible to build this research paper using only free/open source tools.