docs: update docs after Docker organization name change

docs/execution-framework/bench_executor.html

@@ -37,7 +37,7 @@ <h2>Submodules</h2>
                     <li><a href="bench_executor/postgresql.html">postgresql</a></li>
                     <li><a href="bench_executor/query.html">query</a></li>
                     <li><a href="bench_executor/rmlmapper.html">rmlmapper</a></li>
-                    <li><a href="bench_executor/rmlmapper_docker.html">rmlmapper_docker</a></li>
+                    <li><a href="bench_executor/rmlmapper_jar.html">rmlmapper_jar</a></li>
                     <li><a href="bench_executor/rmlstreamer.html">rmlstreamer</a></li>
                     <li><a href="bench_executor/sdmrdfizer.html">sdmrdfizer</a></li>
                     <li><a href="bench_executor/stats.html">stats</a></li>

docs/execution-framework/bench_executor/fuseki.html

@@ -139,7 +139,7 @@ <h1 class="modulename">
 </span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>        <span class="c1"># Set Java heap to 1/2 of available memory instead of the default 1/4</span>
 </span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>        <span class="n">max_heap</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span><span class="o">.</span><span class="n">total</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span><span class="o">/</span><span class="mi">2</span><span class="p">))</span>
 </span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>
-</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
+</span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
 </span><span id="L-49"><a href="#L-49"><span class="linenos"> 49</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="L-50"><a href="#L-50"><span class="linenos"> 50</span></a>                         <span class="n">ports</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;3030&#39;</span><span class="p">:</span> <span class="s1">&#39;3030&#39;</span><span class="p">},</span>
 </span><span id="L-51"><a href="#L-51"><span class="linenos"> 51</span></a>                         <span class="n">environment</span><span class="o">=</span><span class="p">{</span>
@@ -364,7 +364,7 @@ <h1 class="modulename">
 </span><span id="Fuseki-46"><a href="#Fuseki-46"><span class="linenos"> 46</span></a>        <span class="c1"># Set Java heap to 1/2 of available memory instead of the default 1/4</span>
 </span><span id="Fuseki-47"><a href="#Fuseki-47"><span class="linenos"> 47</span></a>        <span class="n">max_heap</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span><span class="o">.</span><span class="n">total</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span><span class="o">/</span><span class="mi">2</span><span class="p">))</span>
 </span><span id="Fuseki-48"><a href="#Fuseki-48"><span class="linenos"> 48</span></a>
-</span><span id="Fuseki-49"><a href="#Fuseki-49"><span class="linenos"> 49</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
+</span><span id="Fuseki-49"><a href="#Fuseki-49"><span class="linenos"> 49</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
 </span><span id="Fuseki-50"><a href="#Fuseki-50"><span class="linenos"> 50</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="Fuseki-51"><a href="#Fuseki-51"><span class="linenos"> 51</span></a>                         <span class="n">ports</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;3030&#39;</span><span class="p">:</span> <span class="s1">&#39;3030&#39;</span><span class="p">},</span>
 </span><span id="Fuseki-52"><a href="#Fuseki-52"><span class="linenos"> 52</span></a>                         <span class="n">environment</span><span class="o">=</span><span class="p">{</span>
@@ -556,7 +556,7 @@ <h1 class="modulename">
 </span><span id="Fuseki.__init__-46"><a href="#Fuseki.__init__-46"><span class="linenos">46</span></a>        <span class="c1"># Set Java heap to 1/2 of available memory instead of the default 1/4</span>
 </span><span id="Fuseki.__init__-47"><a href="#Fuseki.__init__-47"><span class="linenos">47</span></a>        <span class="n">max_heap</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">psutil</span><span class="o">.</span><span class="n">virtual_memory</span><span class="p">()</span><span class="o">.</span><span class="n">total</span> <span class="o">*</span> <span class="p">(</span><span class="mi">1</span><span class="o">/</span><span class="mi">2</span><span class="p">))</span>
 </span><span id="Fuseki.__init__-48"><a href="#Fuseki.__init__-48"><span class="linenos">48</span></a>
-</span><span id="Fuseki.__init__-49"><a href="#Fuseki.__init__-49"><span class="linenos">49</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
+</span><span id="Fuseki.__init__-49"><a href="#Fuseki.__init__-49"><span class="linenos">49</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/fuseki:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Fuseki&#39;</span><span class="p">,</span>
 </span><span id="Fuseki.__init__-50"><a href="#Fuseki.__init__-50"><span class="linenos">50</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="Fuseki.__init__-51"><a href="#Fuseki.__init__-51"><span class="linenos">51</span></a>                         <span class="n">ports</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;3030&#39;</span><span class="p">:</span> <span class="s1">&#39;3030&#39;</span><span class="p">},</span>
 </span><span id="Fuseki.__init__-52"><a href="#Fuseki.__init__-52"><span class="linenos">52</span></a>                         <span class="n">environment</span><span class="o">=</span><span class="p">{</span>

docs/execution-framework/bench_executor/morphkgc.html

@@ -126,7 +126,7 @@ <h1 class="modulename">
 </span><span id="L-42"><a href="#L-42"><span class="linenos"> 42</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span> <span class="o">=</span> <span class="n">Logger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">directory</span><span class="p">,</span> <span class="n">verbose</span><span class="p">)</span>
 </span><span id="L-43"><a href="#L-43"><span class="linenos"> 43</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">umask</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
 </span><span id="L-44"><a href="#L-44"><span class="linenos"> 44</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="p">,</span> <span class="s1">&#39;morphkgc&#39;</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
+</span><span id="L-45"><a href="#L-45"><span class="linenos"> 45</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
 </span><span id="L-46"><a href="#L-46"><span class="linenos"> 46</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="L-47"><a href="#L-47"><span class="linenos"> 47</span></a>                         <span class="n">volumes</span><span class="o">=</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/morphkgc:/data&#39;</span><span class="p">,</span>
 </span><span id="L-48"><a href="#L-48"><span class="linenos"> 48</span></a>                                  <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/shared:/data/shared&#39;</span><span class="p">])</span>
@@ -344,7 +344,7 @@ <h1 class="modulename">
 </span><span id="MorphKGC-43"><a href="#MorphKGC-43"><span class="linenos"> 43</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span> <span class="o">=</span> <span class="n">Logger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">directory</span><span class="p">,</span> <span class="n">verbose</span><span class="p">)</span>
 </span><span id="MorphKGC-44"><a href="#MorphKGC-44"><span class="linenos"> 44</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">umask</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
 </span><span id="MorphKGC-45"><a href="#MorphKGC-45"><span class="linenos"> 45</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="p">,</span> <span class="s1">&#39;morphkgc&#39;</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-</span><span id="MorphKGC-46"><a href="#MorphKGC-46"><span class="linenos"> 46</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
+</span><span id="MorphKGC-46"><a href="#MorphKGC-46"><span class="linenos"> 46</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
 </span><span id="MorphKGC-47"><a href="#MorphKGC-47"><span class="linenos"> 47</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="MorphKGC-48"><a href="#MorphKGC-48"><span class="linenos"> 48</span></a>                         <span class="n">volumes</span><span class="o">=</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/morphkgc:/data&#39;</span><span class="p">,</span>
 </span><span id="MorphKGC-49"><a href="#MorphKGC-49"><span class="linenos"> 49</span></a>                                  <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/shared:/data/shared&#39;</span><span class="p">])</span>
@@ -538,7 +538,7 @@ <h1 class="modulename">
 </span><span id="MorphKGC.__init__-43"><a href="#MorphKGC.__init__-43"><span class="linenos">43</span></a>        <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span> <span class="o">=</span> <span class="n">Logger</span><span class="p">(</span><span class="vm">__name__</span><span class="p">,</span> <span class="n">directory</span><span class="p">,</span> <span class="n">verbose</span><span class="p">)</span>
 </span><span id="MorphKGC.__init__-44"><a href="#MorphKGC.__init__-44"><span class="linenos">44</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">umask</span><span class="p">(</span><span class="mi">0</span><span class="p">)</span>
 </span><span id="MorphKGC.__init__-45"><a href="#MorphKGC.__init__-45"><span class="linenos">45</span></a>        <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="p">,</span> <span class="s1">&#39;morphkgc&#39;</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-</span><span id="MorphKGC.__init__-46"><a href="#MorphKGC.__init__-46"><span class="linenos">46</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;blindreviewing/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
+</span><span id="MorphKGC.__init__-46"><a href="#MorphKGC.__init__-46"><span class="linenos">46</span></a>        <span class="nb">super</span><span class="p">()</span><span class="o">.</span><span class="fm">__init__</span><span class="p">(</span><span class="sa">f</span><span class="s1">&#39;kgconstruct/morph-kgc:v</span><span class="si">{</span><span class="n">VERSION</span><span class="si">}</span><span class="s1">&#39;</span><span class="p">,</span> <span class="s1">&#39;Morph-KGC&#39;</span><span class="p">,</span>
 </span><span id="MorphKGC.__init__-47"><a href="#MorphKGC.__init__-47"><span class="linenos">47</span></a>                         <span class="bp">self</span><span class="o">.</span><span class="n">_logger</span><span class="p">,</span>
 </span><span id="MorphKGC.__init__-48"><a href="#MorphKGC.__init__-48"><span class="linenos">48</span></a>                         <span class="n">volumes</span><span class="o">=</span><span class="p">[</span><span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/morphkgc:/data&#39;</span><span class="p">,</span>
 </span><span id="MorphKGC.__init__-49"><a href="#MorphKGC.__init__-49"><span class="linenos">49</span></a>                                  <span class="sa">f</span><span class="s1">&#39;</span><span class="si">{</span><span class="bp">self</span><span class="o">.</span><span class="n">_data_path</span><span class="si">}</span><span class="s1">/shared:/data/shared&#39;</span><span class="p">])</span>