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This repository contains the complete set of attention heatmaps referenced in our submission to the MediQA 2019 shared task.

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UW-BHI at MediQA 2019

This repository contains the source code for our project page including attention heatmaps for each of the MedNLI premise/hypothesis pairs.

Team members:

  • William R. Kearns
  • Wilson Lau
  • Jason A. Thomas

Paper link: https://www.aclweb.org/anthology/W19-5054

Project website: https://kearnsw.github.io/MEDIQA-2019/

Abstract

Recent advances in distributed language modeling have led to large performance increases on a variety of natural language processing (NLP) tasks. However, it is not well understood how these methods may be augmented by knowledge-based approaches. This paper compares the performance and internal representation of an Enhanced Sequential Inference Model (ESIM) between three experimental conditions based on the representation method: Bidirectional Encoder Representations from Transformers (BERT), Embeddings of Semantic Predications (ESP), or Cui2Vec. The methods were evaluated on the Medical Natural Language Inference (MedNLI) subtask of the MEDIQA 2019 shared task. This task relied heavily on semantic understanding and thus served as a suitable evaluation set for the comparison of these representation methods.

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This repository contains the complete set of attention heatmaps referenced in our submission to the MediQA 2019 shared task.

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