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Merge pull request #7 from rtviii/master
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Time results, cupy filter
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fredericpoitevin authored Jun 15, 2021
2 parents e117010 + f8a388d commit 1e8778d
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4 changes: 4 additions & 0 deletions .gitignore
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# bundle
otmorph-bundle/ChimeraX_MorphOT.egg-info/PKG-INFO
otmorph-bundle/dist/ChimeraX_MorphOT-0.1-py3-none-any.whl
*.mrc
venv/
.vscode/
__pycache__/
8 changes: 5 additions & 3 deletions README.md
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Expand Up @@ -92,10 +92,12 @@ Remark: the movie will be generated with voxel size 1.

Here are the times MorphOT takes to run a trajectory of 25 frames with the previous maps, for both CPU and GPU implementations

Grid | CPU (Intel i7-10850h @ 2.30 GHz ) | GPU ( NVIDIA RTX 2070 Super)
Grid | CPU (Intel(R) Core(R) i7-10875H @ 2.30GHz) | GPU(NVIDIA RTX 2070 Super)
:----------:|:------------------------------------------------:|:---------------:
64x64x64 | 11s (0.44s per frame) | 0.75s (0.03s per frame)
192x192x192 | 582s (23s per frame) | 30s (1.2s per frame)
64x64x64 | 110.5s(0.44s/frame) | 6.55 (0.03s per frame)
96x96x96 | 439.8s (1.76s per frame) | 23.5s (0.09s per frame)
192x192x192 | 5821s (23.28s per frame) | 296s (1.18s per frame)


# Videos
These animations display the result that one should obtain by following the tutorial above, comparing traditional linear interpolation (left) and the transport-based trajectory (right).
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