Merge pull request #39 from jump-cellpainting/crispr

Add CRISPR dataset
jump-cellpainting · Jan 30, 2023 · 8e9c994 · 8e9c994
2 parents 78b712a + 6f33933
commit 8e9c994
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diff --git a/metadata/README.md b/metadata/README.md
@@ -39,6 +39,12 @@ erDiagram
         string Metadata_Gene_Description "NCBI gene definition"
         string Metadata_pert_type "One of: trt, poscon, negcon"
     }
+    WELL }o--o| CRISPR : ""
+    CRISPR {
+        string Metadata_JCP2022 PK "JUMP perturbation ID"
+        string Metadata_Symbol "NCBI gene symbol"
+        string Metadata_NCBI_Gene_ID "NCBI gene ID"
+    }
     PLATE }|--|| MICROSCOPE-CONFIG : ""
     MICROSCOPE-CONFIG {
         string Metadata_Source "Data-generating center ID"

diff --git a/metadata/crispr.csv.gz b/metadata/crispr.csv.gz
diff --git a/metadata/plate.csv.gz b/metadata/plate.csv.gz
diff --git a/metadata/well.csv.gz b/metadata/well.csv.gz
diff --git a/sample_notebook.ipynb b/sample_notebook.ipynb