GitHub - jonasns/LiveRNome: This repository contains scripts used for the RBP-lncRNA project

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This repository contains scripts used for the RBP-lncRNA project

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Name		Name	Last commit message	Last commit date
Latest commit History 38 Commits
171003_HiSAT2_ref_genome_build_JNS.sh		171003_HiSAT2_ref_genome_build_JNS.sh
171003_HiSAT2_ref_rRNA_build_JNS.sh		171003_HiSAT2_ref_rRNA_build_JNS.sh
171005_MultiQC_JNS.sh		171005_MultiQC_JNS.sh
171010_RSeQC_JNS.sh		171010_RSeQC_JNS.sh
171030_StringTie_Assemble_all4mergedBAM_JNS.sh		171030_StringTie_Assemble_all4mergedBAM_JNS.sh
171031_StringTie_Merge_all4mergedBAM_JNS.sh		171031_StringTie_Merge_all4mergedBAM_JNS.sh
171129_merge_bams_all4_JNS.sh		171129_merge_bams_all4_JNS.sh
171130_bedgraphGen_bedtools_fwdrev_merged_JNS.sh		171130_bedgraphGen_bedtools_fwdrev_merged_JNS.sh
181214_FastQC.sh		181214_FastQC.sh
181214_Trimmomatic_PE.sh		181214_Trimmomatic_PE.sh
181215_HiSAT2_nsa_ref_genome.sh		181215_HiSAT2_nsa_ref_genome.sh
181215_HiSAT2_rRNA.sh		181215_HiSAT2_rRNA.sh
181216_sam_to_bam_sort_index_flagstat.sh		181216_sam_to_bam_sort_index_flagstat.sh
181218_bedgraphGenIndiv_homer_fwdrev.sh		181218_bedgraphGenIndiv_homer_fwdrev.sh
181218_splitBam_fwdrev.sh		181218_splitBam_fwdrev.sh
190220_bedtools_getfasta.sh		190220_bedtools_getfasta.sh
190313_edgeR_RBP_KD.Rmd		190313_edgeR_RBP_KD.Rmd
190425_FeatureCounts.sh		190425_FeatureCounts.sh
190819_edgeR_CaT_Seq.Rmd		190819_edgeR_CaT_Seq.Rmd
190819_gimmeMotif.scripts		190819_gimmeMotif.scripts
190820_RBP1_lncFARED1_GO_KEGG_analysis.Rmd		190820_RBP1_lncFARED1_GO_KEGG_analysis.Rmd
190820_TCGA_survival_analysis.Rmd		190820_TCGA_survival_analysis.Rmd
190822_TCGA_DESeq.Rmd		190822_TCGA_DESeq.Rmd
200415_Australia_HCC_cohort_DEseq.Rmd		200415_Australia_HCC_cohort_DEseq.Rmd
9.PrepareMergedGTF.denovoStringTie.py		9.PrepareMergedGTF.denovoStringTie.py
TruSeq3-PE-2.fa		TruSeq3-PE-2.fa