GitHub - jmhallas/scripts: Scripts for analysis used during the course

This branch is 5 commits behind speciationgenomics/scripts:master.

Name	Name	Last commit message	Last commit date
Latest commit joanam Add option to specify x axis dimensions Mar 19, 2021 376292a · Mar 19, 2021 History 22 Commits
align_sort_loop.sh	align_sort_loop.sh	Script commit	Dec 14, 2018
calculateAIC.sh	calculateAIC.sh	Script commit	Dec 14, 2018
calculate_bam_coverage.sh	calculate_bam_coverage.sh	Script commit	Dec 14, 2018
checkHetsIndvVCF.sh	checkHetsIndvVCF.sh	Add option to specify x axis dimensions	Mar 19, 2021
convertVCFtoEigenstrat.sh	convertVCFtoEigenstrat.sh	Add option to rename scaffolds	Jan 14, 2021
convert_vcf_to_geno.sh	convert_vcf_to_geno.sh	Script commit	Dec 14, 2018
easysfs_conversion.sh	easysfs_conversion.sh	Script commit	Dec 14, 2018
filter_vcf.sh	filter_vcf.sh	Script commit	Dec 14, 2018
find_outliers_and_genes_all.R	find_outliers_and_genes_all.R	Upload R scripts	Dec 14, 2018
fsc-selectbestrun.sh	fsc-selectbestrun.sh	Script commit	Dec 14, 2018
genomeScan.r	genomeScan.r	Add files via upload	Dec 11, 2020
genome_wide_FST.sh	genome_wide_FST.sh	Script commit	Dec 14, 2018
genome_windows.sh	genome_windows.sh	Script commit	Dec 14, 2018
ldPruning.sh	ldPruning.sh	Script commit	Dec 14, 2018
ld_pruning_pca.sh	ld_pruning_pca.sh	Script commit	Dec 14, 2018
parallel_align.sh	parallel_align.sh	Script commit	Dec 14, 2018
parallel_align_100k.sh	parallel_align_100k.sh	Script commit	Dec 14, 2018
plotADMIXTURE.r	plotADMIXTURE.r	Merge pull request speciationgenomics#8 from ethering/patch-2	Jan 12, 2021
plotModel.r	plotModel.r	Add files via upload	Sep 8, 2019
sample_vcf_create_stats.sh	sample_vcf_create_stats.sh	Script commit	Dec 14, 2018
slidingWindow_plotting.r	slidingWindow_plotting.r	Upload R scripts	Dec 14, 2018
vcf2treemix.sh	vcf2treemix.sh	Script commit	Dec 14, 2018