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Version 1.15.0 (14th April 2023)
Version number bumped to reflect the official status of CRAM 3.1.
Updates:
-
Formally accept CRAM 3.1 as an official standard. Warning removed.
For best compatibility CRAM 3.0 is still the default CRAM, but use
"-V3.1" to specify the version. -
Updated to latest htscodecs. This has a significant speed
improvement in encoding with fqzcomp (enabled in "-X small" profile).Tested on a NovaSeq dataset, encoding from BAM to CRAM was 27% faster.
Decoding a CRAM with fqzcomp is also around 6% faster.